Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00117 ATGGCCAGAAAAAACGAGGGATGTGCAGTGGGGATAGACCTCGGAACAACGTACTCGTGTGTTGCAGTATGGCAGGAGCAGCAGGGGCGAGTGGAGATCATCCACAATGACCAAGGCAACAACATCACTCCTTCTTTTGTTGCTTTCACAGACAAACAAAGATTGATAGGTGATGCTGCTAAAAACCAGGCTGCCACCAATCCAGAGAACACTGTGTTTGATGCTAAAAGATTAATTGGTCGGAAGTGTAGTGATCCCATTGTTGAAAAAGATAAAAGGTTGTGGCCATTCAAGGTCATTCCTGGTGATGATGACAAACCCATGGTTGTAGTTAACTACAAGGGTCAGCAAAAGCACCTTTCAGCCGAGGAAATATCATCAATGGTTCTCTCAAAAATGAGGGAGATTGCAGAGACCTTTCTGGAAAAACCTGTGAGGAATGCAGTGGTTACTGTTCCTGCTCATTTCAATGACTCTCAGCGTAAAGCTACAGTAGATGCAGGAACCATTGCTGGCCTCAATGTTATGCGGATAATCAATGAACCCACAGCTGCAGCTATTGCATATGGTCTTGACAAGAGAACCAAAAGTGTTGGAGAGAGAAATGTTTTCGTATTTGACCTCGGAGGTGGTACCTTTGACGTGTCTATCCTCACAATTAAGGATAAGGTGTTCCAAGTTAAGGCTACTGCAGGAAACACTCATCTTGGGGGAGAAGACATTGATAACAGAATGGTGGAGTACTTTGTGGAGCATATCAAAAGGAAATACAAAGTGGACATTAGTGGGAACCCAAGAGCTCTAAGGAGGTTGAGAACTGCATGCGAAAGAGCAAAAAGGACACTCTCGTCTACACTCACTACAAACATTGAGATAGATGCCTTATTTCAAGGTATTGACTTCTGTTCTTCGATCACTCGTGCAAAGTTCGATGAAATCAATATGGAGCTCTTTGAAGAGTGTATGGAGACCGTAGATAGATGTCTCAGCGATGCTAAGATGGACAAGAACAGTGTGCATGATGTTGTACTAGTTGGTGGCTCTTCTAGGATTCCTAAAGTGCAGCAACTATTGCAGGAGTTCTTCAAGGGAAAGGATCTGTGCAAGAGCATCAACCCTGACGAAGCTGTTGCTAACGGTGCAGCTGTTCAAGCTGCTTTGTTGTGTGAAGGCATTGAGAATGTTCCTGACCTGGTGTTGTTGGATGTGACACCGCTGTCACTTGGTACATATACAACGGGAGATATCATGAATGTAATGATTCCTAGGAATACTGGAATTCCTGTAAAGAGGACAGAAGAGTTTGGAACAGTTTATGATGATCAAACCAGTGCCTCGATTAAGGTTTATGAGGGTGAAAGAACAAAAGCGAGTGAGAACAATTTGCTGGGGCTTTTTAGTCTTACCTTTCCTCCAGCTCCTCGTGGGTATCCTATTCTTGTGTGCTTTGGCATTGATGAAAATGGTACTCTATCTGTTTCTGCCGAGGATCAAACCACGGGCAATAAGAACCAGATTACCATAACCAACAACAAAGAGAGACTGTCAGCTGAAGAAATGAGTAGAATGATTAAAGAAGCTGAAATTTATGAGGCCGACGATAGGAAGTTCCTCAGGAAGGCTAACGCAATGAATTCTTTGGATGATTATGTTTACAAGATGACGAATGCTTTGAAGGACAAGTATAACAGATCAAAGCTTTCCTTGACACAAAAGTTGAACATCAGTTCTGCAATTACTAAGGCCACATATTTGCTTGATGATGATAACCAGCAGGTTGAAGTAGATGTATTTGAGAATTATCTGAAGGAACTCGAGAGTCTCTTTGGTCAGACATTGGACATCAATGGTTAG 1854 0.4277 MARKNEGCAVGIDLGTTYSCVAVWQEQQGRVEIIHNDQGNNITPSFVAFTDKQRLIGDAAKNQAATNPENTVFDAKRLIGRKCSDPIVEKDKRLWPFKVIPGDDDKPMVVVNYKGQQKHLSAEEISSMVLSKMREIAETFLEKPVRNAVVTVPAHFNDSQRKATVDAGTIAGLNVMRIINEPTAAAIAYGLDKRTKSVGERNVFVFDLGGGTFDVSILTIKDKVFQVKATAGNTHLGGEDIDNRMVEYFVEHIKRKYKVDISGNPRALRRLRTACERAKRTLSSTLTTNIEIDALFQGIDFCSSITRAKFDEINMELFEECMETVDRCLSDAKMDKNSVHDVVLVGGSSRIPKVQQLLQEFFKGKDLCKSINPDEAVANGAAVQAALLCEGIENVPDLVLLDVTPLSLGTYTTGDIMNVMIPRNTGIPVKRTEEFGTVYDDQTSASIKVYEGERTKASENNLLGLFSLTFPPAPRGYPILVCFGIDENGTLSVSAEDQTTGNKNQITITNNKERLSAEEMSRMIKEAEIYEADDRKFLRKANAMNSLDDYVYKMTNALKDKYNRSKLSLTQKLNISSAITKATYLLDDDNQQVEVDVFENYLKELESLFGQTLDING 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00117 617 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Vian2g00117 617 Gene3D - 545 613 IPR029048 -
Vian2g00117 617 FunFam Heat shock cognate 70 kDa protein 2 321 368 - -
Vian2g00117 617 FunFam Heat shock 70 kDa 237 320 - -
Vian2g00117 617 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 392 544 IPR029047 -
Vian2g00117 617 Gene3D - 194 368 - -
Vian2g00117 617 PRINTS 70kDa heat shock protein signature 211 221 - -
Vian2g00117 617 PRINTS 70kDa heat shock protein signature 60 68 - -
Vian2g00117 617 PRINTS 70kDa heat shock protein signature 38 50 - -
Vian2g00117 617 PRINTS 70kDa heat shock protein signature 8 21 - -
Vian2g00117 617 PRINTS 70kDa heat shock protein signature 476 492 - -
Vian2g00117 617 PRINTS 70kDa heat shock protein signature 371 391 - -
Vian2g00117 617 PRINTS 70kDa heat shock protein signature 339 355 - -
Vian2g00117 617 PRINTS 70kDa heat shock protein signature 397 416 - -
Vian2g00117 617 PRINTS 70kDa heat shock protein signature 148 168 - -
Vian2g00117 617 FunFam heat shock 70 kDa protein-like 73 128 - -
Vian2g00117 617 SUPERFAMILY Actin-like ATPase domain 200 388 IPR043129 -
Vian2g00117 617 Gene3D - 10 386 - -
Vian2g00117 617 Pfam Hsp70 protein 9 608 IPR013126 GO:0005524|GO:0140662
Vian2g00117 617 FunFam Heat shock protein 70 10 202 - -
Vian2g00117 617 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Vian2g00117 617 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Vian2g00117 617 Gene3D Actin; Chain A, domain 4 237 320 - -
Vian2g00117 617 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Vian2g00117 617 PANTHER HEAT SHOCK PROTEIN 70KDA 9 569 IPR013126 GO:0005524|GO:0140662
Vian2g00117 617 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 393 548 IPR029047 -
Vian2g00117 617 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 543 609 IPR029048 -
Vian2g00117 617 Gene3D - 73 128 - -
Vian2g00117 617 FunFam Heat shock 70 kDa protein 392 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00117 Vian-Chr2 1169175 1171106 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00117 1 608 Calmodulin-binding Proteins AT3G12580 68.249 0.0 840
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00117 K03283 - gmx:102667578 914.45