Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00115 ATGGCAGACGCTGAGGATATTCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCCCCACGTGCTGTGTTTCCCAGCATTGTAGGTCGTCCTCGTCACACTGGTGTGATGGTTGGCATGGGTCAAAAAGATGCATACGTTGGTGATGAGGCTCAGTCTAAGAGGGGTATTTTGACTCTAAAGTACCCAATTGAACATGGAATTGTGAGCAATTGGGATGATATGGAAAAGATTTGGCATCATACCTTCTATAATGAGCTTCGTGTTGCCCCTGAAGAGCATCCAGTTCTGTTAACAGAGGCTCCTCTTAACCCCAAGGCTAACCGTGAGAAGATGACCCAGATCATGTTTGAGACCTTTAACACCCCTGCCATGTATGTTGCCATCCAGGCCGTTCTTTCACTGTATGCAAGTGGTCGTACAACTGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACTGTCCCTATCTATGAGGGTTATGCTCTCCCACATGCCATCCTTCGTCTTGATCTGGCTGGTCGTGACCTCACTGATTTCTTGATGAAAATTTTGACGGAACGTGGTTATTCTTTCACCACCTCAGCAGAGCGGGAAATTGTAAGGGATGTTAAAGAAAAGCTGTCCTACATTGCCCTTGACTATGAACAAGAACTCGAGACAGCAAGGACCAGCTCATCTGTGGAGAAGAGCTATGACATGAAGATCAAGGTTGTAGCACCACCTGAGAGGAAGTACAGTGTCTGGATTGGTGGTTCCATCCTGGCATCTCTCAGCACATTCCAGCAGATGTGGATTGCAAAGGCAGAATATGATGAGTCTGGCCCATCAATTGTTCACAGAAAGTGCTTCTAA 885 0.4667 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDVKEKLSYIALDYEQELETARTSSSVEKSYDMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00115 294 Gene3D Actin; Chain A, domain 4 192 250 - -
Vian2g00115 294 ProSitePatterns Actins signature 2. 275 283 IPR004001 -
Vian2g00115 294 Pfam Actin 5 242 IPR004000 -
Vian2g00115 294 FunFam Actin, alpha skeletal muscle 3 172 - -
Vian2g00115 294 FunFam Actin, alpha skeletal muscle 235 294 - -
Vian2g00115 294 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Vian2g00115 294 Gene3D - 140 191 - -
Vian2g00115 294 PRINTS Actin signature 117 130 IPR004000 -
Vian2g00115 294 PRINTS Actin signature 28 37 IPR004000 -
Vian2g00115 294 PRINTS Actin signature 142 161 IPR004000 -
Vian2g00115 294 PRINTS Actin signature 63 85 IPR004000 -
Vian2g00115 294 PRINTS Actin signature 51 62 IPR004000 -
Vian2g00115 294 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Vian2g00115 294 SMART actin_3 7 294 IPR004000 -
Vian2g00115 294 FunFam ARP1 actin related protein 1 homolog B 182 217 - -
Vian2g00115 294 Gene3D - 3 294 - -
Vian2g00115 294 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Vian2g00115 294 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Vian2g00115 294 SUPERFAMILY Actin-like ATPase domain 148 294 IPR043129 -
Vian2g00115 294 PANTHER ACTIN 244 287 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00115 Vian-Chr2 1107268 1108768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00115 244 294 Cytoskeleton Gene Families AT3G12110 100.000 4.82e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00115 K10355 - ccav:112504665 561.607