Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00110 ATGTTTCGCCGCCATGGTCCTGCTGGTTACAAACATATGTTGGTGTCGGATTCTGAAACTGAGTCTGATGATAACCTTAGCGCTGTTGCTGTTACTGTTGCTAAGGATGGAAGAAGACAAAAGGAGGAAGAAGAAGGAGAGAGAGATCTTTCAACTCACCAACGTCCTACACCATCATTCAAGTCCAAACAAACTCTTGATCCAGTTGCAAAGGAATATCAAAAGAAGATGGAGAAGAAGAGTATTCCAAGAGAACGGTTAAAGGAGATGGTGGTTGTGAACTGGAGAGGTTTGGCGAAAACCATGAAAACGTTGTACGGACAACCTTTGCATTATCTAACACAGGAGCTTTGCAAAGAATGGGATAAGTCGAGGTTTGGAAGCAAAAACGAAGAGAAGGCATTGAATAGTATATTTAGTTGGCGTGAGGCTGAAGAGACTGTTTGGAAAGTTGAAGCAGTTCATAGACTCTGCACTTCGCCTGTTCATCTTGCACTGCTTTGGCTTCATGACCCACAATACCATCTCATTGTTGATGAAACCGTGAGCACAAGGGGGAGACCAGACAGTTTTGATTCCTCTTCATTTTGTTTTGAGCTTGGAATTAGTTTTGGGGGTTGTTTTGGTCTTGCTGTAATCATAGCGAAAATTGAATGTGCATCTTTCCTTTTAATAGCTAGATTGGAAGAGGATTTGACCACTGCTTCATATGATTTGGATACTTCCTTTTGTTTTTCTGAGGTCGGTGCTGAGTTCATCGAGACCTTCATTCTTATGTTCACAATCACTACCGCCGCCATTGTCAACGAGAACACAAACGGCTCTGAGACTCTCATAGGTTGTGCTGCCACCAGTGGTCTTGATGTTATGATCCTCATCTTTGCCACAGGCCACATCTCTGGTGCTCATTTCAATCCTGTCGTGCCTATGTATATTGGTGCACAAATTTTGGCATCGATTTGTGCCGCATTTGCTTTGAAATGGGTTTATCACCCTTTCATGAGTCGTGGAGTCACAGCTCCTTTAAGAAGCTACGCCCCATCTTTTGCTTTGGAATTCATTATTGCCTTTAATCTAATGTTCGTTGTCACTGCAGTAGCCACCGAAACCAGAGTTATGAGCACTTCTGGTGTACTTCTTTCTAGAAGTTTCACCAATGCCAACAATACAACAAATAATACTAATAAGAATTTCCTTCCCAAGTGTTGTAGATGCTTGACTTTGGATGATAGGACCATAAAAGATGGAGCCTTATCGTCCGTCTCATGCTCTCTATCATTGTCTCTTCTTGTGCCTTTGGCAAGAAAGGTCGGTGCTGAGTTCATCGGGACCATCATTCTTATGTTCGTCGCCACTACCGCCGCCATTGTCAACGAGAAGACAAACGGCTCTGAGGCTCTCATAGGTTGTGCTACCACCACTGGTCTTGCTGTTATGATCCTCATCTTTGCCACAGGCCACATCTCTAGTGCTCACTTCAATCCTGTCGTCATCCTTTCCTTTGTTGCATTGAAACAATTCCCTTGGAAACATGTATGCTTGACTTTTGATGATAGGACCATAGAAGATGGAGCATTACCATCCGTCTCATGCTCTTTGTCACTCTGTCCTCTTGTGCCTTTGGCAAGAAAGGTCGGTGTTGAGTTCATCGGTACCTTCATTCTTATGTTCGCCGCCACTGCCGCCGCCATTGTCAACGAGAAGACAAACGGCTTTGAGACTCTCATAGGTTGTGCTGCCACCACTAGTCTTGTTGTTATGATCCTCATCTTTGCCACAGGCCACATCTCATGTGCTCATTTCAATCCTGTCGTCACCCTTTCCTTTGCTGCATTGAAACACTTCCCCTGGAAAAATGCGTGCACTTCTGGTGTACTTCTTTCTAGAAGTTTCACCAATGCCAACAATACAACAAATAATATTAATAAGAATTTCCTTCCCAAGTGTTGTAGATGCTTGACTTTGGATGATAGCACCCTAGAAGATGGAGCCTTACCATCCGTCTCATGGTCTTTGTCACTGTCTCCTCTTGTGCCTTTGGCAAGAAAGGTCCGTGCTGAGTTCATCGGTACCTTCATTCTTATGTTCGCCGCCACTGCCGTCGCTATTGTCAACGAGAAGACAAACGGCTCTGAGACTCTCATAGGTTGTGCTGCCACCACTGGTCTTGCTGTTATGATCCTCATCTTTGCCACAGGCCACATCTCTGGTGCTCACTTCAATCTTGCTGTGCCTATGTATATTGGTGCACAAATTTTGGCATCGATTTGTGCCGCATTTGCTCTGAAATGTGTTTATCACCTTTTCATGAGTGGTGGAGTCACAGTTCCTTTAGGAGGATACGCGCCATCTTTTGCTTTGGAATTCATTATTGCCTTTAATCTAATGTTCGTTGTCACTGCAGTAGCCACCGACACGAGAGTTGTTAGCCAGAATCACGTAGGTGCAAGCTGCGTTGTTATGATCCTCATCTTTGCCACATGCCACATCTCTGGTGCTCACTTCAATCCTGTTGTCACCCTTTCCTTTGCTGCATTAAAACACTTCCCCTGGAAACATGTGCCTATGTATATTGGTGCACAAATTTTGGCATCGATTTGTGCCGCATTTGCTCTGAAATGGGTTTATCACCCTTTCATGAGTGGTGGAGTCACAGTTCCTTTAGGAGGATACGGCCCATCTTTTGCTTTGGAATTCATTATTGCCTTTAATCTAATGTTCTTTGTCACTACAGTAGCCACCAATACCAGAGTTGTGAGTATATTTTTCTCCTCTCATTACATCCTTCAGATGTGA 2796 0.4406 MFRRHGPAGYKHMLVSDSETESDDNLSAVAVTVAKDGRRQKEEEEGERDLSTHQRPTPSFKSKQTLDPVAKEYQKKMEKKSIPRERLKEMVVVNWRGLAKTMKTLYGQPLHYLTQELCKEWDKSRFGSKNEEKALNSIFSWREAEETVWKVEAVHRLCTSPVHLALLWLHDPQYHLIVDETVSTRGRPDSFDSSSFCFELGISFGGCFGLAVIIAKIECASFLLIARLEEDLTTASYDLDTSFCFSEVGAEFIETFILMFTITTAAIVNENTNGSETLIGCAATSGLDVMILIFATGHISGAHFNPVVPMYIGAQILASICAAFALKWVYHPFMSRGVTAPLRSYAPSFALEFIIAFNLMFVVTAVATETRVMSTSGVLLSRSFTNANNTTNNTNKNFLPKCCRCLTLDDRTIKDGALSSVSCSLSLSLLVPLARKVGAEFIGTIILMFVATTAAIVNEKTNGSEALIGCATTTGLAVMILIFATGHISSAHFNPVVILSFVALKQFPWKHVCLTFDDRTIEDGALPSVSCSLSLCPLVPLARKVGVEFIGTFILMFAATAAAIVNEKTNGFETLIGCAATTSLVVMILIFATGHISCAHFNPVVTLSFAALKHFPWKNACTSGVLLSRSFTNANNTTNNINKNFLPKCCRCLTLDDSTLEDGALPSVSWSLSLSPLVPLARKVRAEFIGTFILMFAATAVAIVNEKTNGSETLIGCAATTGLAVMILIFATGHISGAHFNLAVPMYIGAQILASICAAFALKCVYHLFMSGGVTVPLGGYAPSFALEFIIAFNLMFVVTAVATDTRVVSQNHVGASCVVMILIFATCHISGAHFNPVVTLSFAALKHFPWKHVPMYIGAQILASICAAFALKWVYHPFMSGGVTVPLGGYGPSFALEFIIAFNLMFFVTTVATNTRVVSIFFSSHYILQM 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00110 931 PRINTS Major intrinsic protein family signature 543 562 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00110 931 PRINTS Major intrinsic protein family signature 582 606 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00110 931 PRINTS Major intrinsic protein family signature 722 744 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00110 931 PRINTS Major intrinsic protein family signature 686 704 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00110 931 PANTHER AQUAPORIN NIP2-1 674 815 IPR034294 -
Vian2g00110 931 SUPERFAMILY Aquaporin-like 678 807 IPR023271 -
Vian2g00110 931 SUPERFAMILY Hypothetical protein At3g22680 70 180 IPR036319 -
Vian2g00110 931 MobiDBLite consensus disorder prediction 1 66 - -
Vian2g00110 931 Pfam Major intrinsic protein 246 377 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00110 931 Pfam Major intrinsic protein 815 919 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00110 931 Pfam Major intrinsic protein 433 513 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00110 931 Pfam Major intrinsic protein 542 620 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00110 931 Pfam Major intrinsic protein 680 814 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vian2g00110 931 SUPERFAMILY Aquaporin-like 539 620 IPR023271 -
Vian2g00110 931 Gene3D RDM1 protein domain 65 185 IPR036319 -
Vian2g00110 931 Gene3D Glycerol uptake facilitator protein. 814 928 IPR023271 -
Vian2g00110 931 SUPERFAMILY Aquaporin-like 814 919 IPR023271 -
Vian2g00110 931 MobiDBLite consensus disorder prediction 35 54 - -
Vian2g00110 931 Gene3D Glycerol uptake facilitator protein. 237 384 IPR023271 -
Vian2g00110 931 SUPERFAMILY Aquaporin-like 247 375 IPR023271 -
Vian2g00110 931 Gene3D Glycerol uptake facilitator protein. 417 516 IPR023271 -
Vian2g00110 931 Gene3D Glycerol uptake facilitator protein. 536 623 IPR023271 -
Vian2g00110 931 Gene3D Glycerol uptake facilitator protein. 660 813 IPR023271 -
Vian2g00110 931 Pfam RNA-directed DNA methylation 1 70 182 IPR015270 GO:0005634|GO:0044030
Vian2g00110 931 SUPERFAMILY Aquaporin-like 433 514 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00110 Vian-Chr2 1067485 1082270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00110 788 920 Major Intrinsic Protein MIP AT1G80760 58.042 2.57e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00110 K09874 - vra:111241468 350.903