Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00100 ATGCACCCGACAATAGCTTCTGTTATTGTGATTATCAATCAAGTATATTTTGAACCAATTGCGTGTGGTTCTGATTCACATACTCATTCTTCTATTTCTGTATACCGGGATGCGGGGATGTGCTTGGAGGTGGACTCTCCACTTCATGCCCCTTCATCATCAGCATCTTCTTCTTCTTCCTCCCATGTGCTTCGTCCTCCTCCAGGCCTCACCCATGCTTCTCGTAACCTCAAGAATCCTCTGAATCCTGCAAGTTCTGCTGTAGCAGATTTCAAGAAAAAAGAACAGGCTGGTGCTGAGGAGGCTCGGCTTATCAGCCACCTGTGGCGTCTAGCGTGTTTCTTTGAGACTTTCAGGATTTGTGTCATCATGGCCTTACAAAACATTGGTGCTGGTAACAGTGACGATGCCTTCTACAGGTACAAGATGCCAAGAATGATCACCAAAATAGAGGGCAGAGGTAATGGCATCAAAACAAATGTTGTCAATATGGTTGATATCGCAAAAGCCTTGGCAAGGCCAGCTTCCTACACAACAAAGTATTTCGGATGTGAGCTTGGAGCCCAGTCAAAGTTTGATGAGAAAACTGGAACATCCCATGTTAATGGCGCACATGATACTGCAAAACTTGCTGGCCTTCTTGAAATCTTCATCAAGAAATATGTCCAGTGTTATGGTTGTGGAAATCCTGAAACTGATATCTTAATTACTAAGAGCCAAATGATCCAGCTGAAATGTGCTGCTTGTGGGTTTGTGTCTGACGTTGATATGAGAGACAAGCTAACTACTTTCATCATTAAAAACCCTCCAGAAGTTAAGAAAGGATCCAAAGACAAGAAGGCTATGAGGAGAGCTGAGAAAGAGAGACTGAAGGAAGGTGAAATGGCTGATGAGGAACAGAAAAAACTGAAGAAAGAGGTTATTAAGAAGAAAGGAACTTCCTCTTCTAAGGATGGTGCTCCGAAATCTACCTCTTCAAGGAAAAAGGCAAATGGCTCCGATGAAGACCGGGCATCGCCTCCCCGCAGTCAAATTGATGAGAAGAATGAGGCTCATGACAAGGAAGATGTGGATGACGACATAGAATGGCAAACCGATACATCACTGGAGGCTGCTCGTCAACGAATCCAGGAACAGCTGAGTGCTGTGACAGCTGATATGGTCATGCTCTCCACAGATGAACCAGAGAAGGAGGAGAAAACCAGAACTAAGGTAAGTGATAATTCTGAGAATGGTAACTTTTTGGCGTATAGGACACTGGTTGCAGAAGTGAAAGCAAATTTGAATAAAGGTGTCGAGGCAAAAGAGTTGGTGTCCCATCTAGCAGCGCTTCCGGCATCTGCTCAGGAGAAGATGAGTGCTCTGTATGAAGCCCTGTTTGAGGGCATCGAGAAAGGGTTTGCAAAAGAAGCAATTAAGAAGAAGAACTACCTTGCTGCTGCAGTTGCCGAGGAGGAGGGTTTGCAGTTGTTACTGTTGTGTGCAATTGAGGAATTTTCTTGTAAGTCTACTTCCAATGCGTTGAAGGAAGTTGCCCTGGTTCTGAAGGCACTCTACGACGCTGATGTGTTGGAGGAAGAGCACATGGTGCAGTGGTATCAAAAGGGACTGAAAGGCGATAATAAGAACTCTCAGATATGGAAGAATGCTCAGCCGTTCATTGAATGGCTTCAGAATGCAGAATCAGAATCGGATGAAGAATAA 1704 0.4454 MHPTIASVIVIINQVYFEPIACGSDSHTHSSISVYRDAGMCLEVDSPLHAPSSSASSSSSSHVLRPPPGLTHASRNLKNPLNPASSAVADFKKKEQAGAEEARLISHLWRLACFFETFRICVIMALQNIGAGNSDDAFYRYKMPRMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLEIFIKKYVQCYGCGNPETDILITKSQMIQLKCAACGFVSDVDMRDKLTTFIIKNPPEVKKGSKDKKAMRRAEKERLKEGEMADEEQKKLKKEVIKKKGTSSSKDGAPKSTSSRKKANGSDEDRASPPRSQIDEKNEAHDKEDVDDDIEWQTDTSLEAARQRIQEQLSAVTADMVMLSTDEPEKEEKTRTKVSDNSENGNFLAYRTLVAEVKANLNKGVEAKELVSHLAALPASAQEKMSALYEALFEGIEKGFAKEAIKKKNYLAAAVAEEEGLQLLLLCAIEEFSCKSTSNALKEVALVLKALYDADVLEEEHMVQWYQKGLKGDNKNSQIWKNAQPFIEWLQNAESESDEE 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00100 567 ProSiteProfiles W2 domain profile. 407 567 IPR003307 GO:0005515
Vian2g00100 567 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 126 566 IPR045196 GO:0003743|GO:0006413
Vian2g00100 567 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 133 224 IPR016189 GO:0003743|GO:0006413
Vian2g00100 567 MobiDBLite consensus disorder prediction 270 360 - -
Vian2g00100 567 Pfam eIF4-gamma/eIF5/eIF2-epsilon 489 567 IPR003307 GO:0005515
Vian2g00100 567 Pfam Domain found in IF2B/IF5 134 250 IPR002735 GO:0003743|GO:0006413
Vian2g00100 567 Gene3D - 407 567 - -
Vian2g00100 567 Gene3D - 228 268 - -
Vian2g00100 567 FunFam Eukaryotic translation initiation factor 5 124 227 - -
Vian2g00100 567 SMART 542_3 475 563 IPR003307 GO:0005515
Vian2g00100 567 MobiDBLite consensus disorder prediction 271 355 - -
Vian2g00100 567 FunFam Eukaryotic translation initiation factor 5 222 268 - -
Vian2g00100 567 CDD W2_eIF5 420 565 - -
Vian2g00100 567 MobiDBLite consensus disorder prediction 51 82 - -
Vian2g00100 567 MobiDBLite consensus disorder prediction 51 65 - -
Vian2g00100 567 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 221 256 IPR016190 GO:0003743|GO:0006413
Vian2g00100 567 SUPERFAMILY ARM repeat 417 561 IPR016024 -
Vian2g00100 567 Gene3D - 124 227 - -
Vian2g00100 567 SMART eIF2Bneu4 138 252 IPR002735 GO:0003743|GO:0006413
Vian2g00100 567 FunFam Eukaryotic translation initiation factor 5 413 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00100 Vian-Chr2 991101 999447 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00100 124 560 Eukaryotic Initiation Factors Gene Family AT1G36730 62.780 2.21e-176 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00100 K03262 - gmx:100777906 725.702