Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00099 ATGGCTTTACAGAACATTGGTGCTGCAAACAGCGATGATGCCTTCTATAGGTACAAGATGCCTAAGATGATTACCAAAATTGAGGGCAGAGGTAATGGCATCAAAACTAATGTCGTCAATATGGTTGATATTGCAAAGGCATTGGCAAGGCCAGCTTCTTACACGACTAAGTATTTTGGTTGTGAGCTTGGGGCCCAGTCTAAGTTTGATGAGAAGACTGGGACTTCCCACGTCAATGGAGCCCATGATACTGCAAAGCTTGCTGGCCTTCTTGAGAATTTCATCAAGAAGTATGTCCAGTGTTATGGTTGTGGAAATCCTGAAACTGATATCATAATTACCAAGAACCAGATGATCCAGCTGAAATGTGCTGCTTGTGGTTTTGTGTCCGATGTTGATATGAGAGACAAGCTGACTACCTTCATCGTTAAGAATCCTCCAGAAGTAAAGAAAGGTTCCAAAGACAAGAAGGCCATGCGGAGAGCCGAGAAGGAGAGACTCAAGGAAGGTGAAGCAGCTGATGAGGAACAAAAGAAAGTGAAGAAAGAGGTTAAGAAGAAAGGTTCTTCGTCTACAAAGGATGGCACTGCAAAATCCACCATTTCAAAGAAGAAAGGAAGTGGCTCTGATGAAGATCGCACATCGCCTACTCACAGACAAATTGAAGAGAAAGAGGAAGCTCATGACGAAGATGATGATGATGGCGTGCAATGGCTGACAGATACGTCACTTGATGCTGCTCGTCAACGTATCCAAGAACAGTTAAGTGCTGTGACAGCCGATATGGTTATGCTTTCTACAGATGAACCAGAGAAGAAGAAAAAAGCAGCAAGTAATGAAAATGGTGGCTCTCAGAATGGTAACTCAATGAACTACGGGGCTGTGGTTGCTGAAGTGAAAGCAAATTTGAAGAAAGGTTTTGGAGCAACTGAATTGCTTTCTCGTCTTGCAGCACTTCCCGCACCTGCTCAGGAAAAGATGACTGCTCTAGTTGAAGCTCTATTTGAGGGAACAGAGAAAGGTTTTGGTAAAGTTACTCTTAAGAAGAAGAACTATTTCGCTGCTGCTGTTACAGAGGAGGGATCCCAGATTTTATTGCTTCATGCCATTGAGGAATTCTGCTGCAAGTCTAATTCCAATGCTTTGAAGGAGGTTGCCCTGGTTCTGAAGACACTGTACGATGCTGATGTGTTGGAGGAAGAGCACCTGGTTATGTGGTATCAAAAGGGACTGAAAGGCGATAACAAGAACTCCAAGATTTGGAAGAATGCCCAACCTTTCATTGAATGGCTTCAGAATGCAGAATCAGAATCGGATGAAGAATAA 1326 0.4336 MALQNIGAANSDDAFYRYKMPKMITKIEGRGNGIKTNVVNMVDIAKALARPASYTTKYFGCELGAQSKFDEKTGTSHVNGAHDTAKLAGLLENFIKKYVQCYGCGNPETDIIITKNQMIQLKCAACGFVSDVDMRDKLTTFIVKNPPEVKKGSKDKKAMRRAEKERLKEGEAADEEQKKVKKEVKKKGSSSTKDGTAKSTISKKKGSGSDEDRTSPTHRQIEEKEEAHDEDDDDGVQWLTDTSLDAARQRIQEQLSAVTADMVMLSTDEPEKKKKAASNENGGSQNGNSMNYGAVVAEVKANLKKGFGATELLSRLAALPAPAQEKMTALVEALFEGTEKGFGKVTLKKKNYFAAAVTEEGSQILLLHAIEEFCCKSNSNALKEVALVLKTLYDADVLEEEHLVMWYQKGLKGDNKNSKIWKNAQPFIEWLQNAESESDEE 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00099 441 CDD W2_eIF5 325 439 - -
Vian2g00099 441 Pfam eIF4-gamma/eIF5/eIF2-epsilon 363 441 IPR003307 GO:0005515
Vian2g00099 441 SUPERFAMILY Translation initiation factor 2 beta, aIF2beta, N-terminal domain 11 101 IPR016189 GO:0003743|GO:0006413
Vian2g00099 441 SUPERFAMILY ARM repeat 292 435 IPR016024 -
Vian2g00099 441 Coils Coil 159 179 - -
Vian2g00099 441 SMART 542_3 350 437 IPR003307 GO:0005515
Vian2g00099 441 Gene3D - 290 441 - -
Vian2g00099 441 Gene3D - 2 104 - -
Vian2g00099 441 Gene3D - 105 145 - -
Vian2g00099 441 MobiDBLite consensus disorder prediction 148 225 - -
Vian2g00099 441 SUPERFAMILY Zinc-binding domain of translation initiation factor 2 beta 98 133 IPR016190 GO:0003743|GO:0006413
Vian2g00099 441 ProSiteProfiles W2 domain profile. 282 441 IPR003307 GO:0005515
Vian2g00099 441 FunFam Eukaryotic translation initiation factor 5 1 104 - -
Vian2g00099 441 FunFam Eukaryotic translation initiation factor 5 105 145 - -
Vian2g00099 441 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 440 IPR045196 GO:0003743|GO:0006413
Vian2g00099 441 SMART eIF2Bneu4 15 129 IPR002735 GO:0003743|GO:0006413
Vian2g00099 441 MobiDBLite consensus disorder prediction 147 237 - -
Vian2g00099 441 MobiDBLite consensus disorder prediction 269 289 - -
Vian2g00099 441 Pfam Domain found in IF2B/IF5 11 127 IPR002735 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00099 Vian-Chr2 989244 990569 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00099 1 434 Eukaryotic Initiation Factors Gene Family AT1G77840 63.182 1.49e-176 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00099 K03262 - gmx:100777906 743.806