Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00095 ATGGATTCTGAAACCCTAGACTCCACCCAGCTGTTCCTCACAGCCCTCAAAACCCTCCAACCCGACCCTCCTCCTCCAGCCTCCACCTCCCTCTCCCCATTCCCCTCCTCCCTCCCTCACTCCAAACTTATCCCCCACACACGCTTCCTCGTCGACGCCTTCCGCCACGCCGGCCCCTACTCCCACTCCTACTTCCTCTCCCACTTCCACTCCGACCACTACACCGGCCTCTCCGCCTCCTGGTCCCGCGGCGTCATCTTCTGCTCCGCCACCACCGCCTCTCTCCTCCGCAACATCCTCCACGTCCCCGCTGCCCTCGTCGTCCCTCTTCCCCTCCGCCAAACCCTTTGCATTGATGGCGCCCAAGTCACCCTCCTCGACGCCAACCACTGCCCCGGCGCCGTACAGTTCCTCTTCGCCATCCCCTGCGCCGATGGCACCGCCGCCCTAAGGTACGTTCACACTGGCGACTTCCGTTTTTCTAGTTCCATGGTTTCGGAGCCCGCCCTCGCCTCCTTCGTCGGTGCCGATGCGGTTTTTCTCGACACGACATATTGTAATCCTAAGTTCGTTTTCCCCTCGCAAGAGGAATCTATTGATTACGTTGCCAGTGTTGTGGAGAGGGTTGAGCGTGAGTGTGGTGATAGTAATGATAAAGTTCTATTTCTTGTTGCTACTTATGTTATTGGGAAGGAGAAGATTTTGCTTGAGCTTGCACGTAGATTTAAGAGGAAGATACATGTTGATGCTAGGAAGATGGAGGTTTTGAGGGTTCTTGGGTATGGGGAGAGCGGTGAGTTTACTGAGAATGGGTTGGAGAGTAATATTCATGTTGTTGGGTGGAATGTGTTGGGGGAGACTTGGCCATACTTTAGGCCTAATTTTGTTAAGATGAAGGAGGTTATGGCTGAAAGAGGGGGTTCCTACTCCAGGGTTGTGGGCTTTGTTCCTACCGGCTGGACCTATGAGGTGAAGCGCAGTAGGTTTGCAGTCAAGTGCAAGGATTCATTTCAGATTCATCTTGTGCCCTATAGTGAGCACTCGAACTATGATGAGCTCAGGGAGTATGTGAAGTTTTTGAAGCCAAAGCGGGTTGTTCCGACTGTGGGTTTGGATGTTGAGAAGAGTGACAGTAAACATGCTAACAGAATTATGAAGCACTTTGCCGGGTTAGTTGATGAGACTGCTAACAAGCATGAGTTTTTAAGGGGGTTTTGCCGTGGCCTTGGTGAAGTGGGTTTCAAGGCTGAGAAGGGTGTTAGTGATGTTCTGGAACCAGGTCAAGGCATGGGCAAGGAAGTCATTCCATTGGAGGAGGTAGAAGGTGATAAGAGTATTGATCCAGGTGTGGCTGTGGGTTTGCATTCTTTTATGGGAGATACTTGTACAGAAGATCCTACTTTGCTGACCGATGAAGAAAAAGAGAAAATAATTCGAGAACTTAGTTGTAGTTTACCCACGTGGGTCACCCGAGACCAGATGCTGGATATGATCAGCATCTCTGGGAGTAATGTCGTTGAAGCTGTTTCTAATTTCTATGAACGTGAAACTGAATTTCACGAGCAAGTGATTTCCTGTCAAACTCCTGTTTCAACATCCAAGTGCTGCACATTAAATGACACTGATTCATTTGCAAAACCTAGCCTTAATAATGCAAACAACACTAGCAAAAATATTAACATTTTTCCTAGTCAAGACTCTAAATCAACTATCCTGAGGCATAAACTACCTAGTCCCGTTTCTCCTGCCAAAAGGAAGAGAAGTAGTGGCAGTAAGCCAAACAAAAAAGGCAAAGTCAAAGCAAAATCCGAACCAAGTGATTCAAAGCAGTCCACACTTACAAGATTCTTCAAGAAAGTAATACCTGAGATTCCTGGTGGTACTCAATCTGATAATTCTGAACCAAAGCTTGAACAAAGCTCTGAAGTTGAAGACTTGTTGCCAACTGATGTTGGACAAATTTACAAGGATGAAATTGATCAATTTTTGCAGATAATAAATGGGAATGAGTCATTAAAGAACCATGCCATGACTATAATTAAGAAGACAAAAGGAGATGTCAATAAAGCACTGGATATATATTACTGTAATTCTGGAAATCTTAGCGAAAATGAATTATCAGTTCAAGAGGAGAGCCAAATTGATAGACCATTAGTAAAGAAACATGCATCAGAGGAATTAAGAATTATGCCAGATATTTCTGGGCAGAAAGTGTTAAAAGATAATGTAGATGCTACTCAACTATCTCTACCACCAGAGAAATACAATCCTATAGAACATGATCATTGTTTGTATGCAATGTTTCTATCGCACAGTTTGTTGGCTTTATCTCCAGCAGATGTGCTTCCTGCTGTGTATCTATGCACAAACAAAATTGCTGCAGATCATGAAAATAAGGAATTAAATATTGGTGGAAGTTTAGTCACTGCAGCACTTGAAGAGGCGTGTGGAACAAATCGTTTGAAAATACGGGAGATGTATAACAAATTTGGTGATCTCGGTGATGTTGCTCAAGAATGTCGTCAAACACAGAGATTACTTGCACCACCTACACCACTTCTAATTAAGGATGTTTTCTCTGCACTACAAAAGATAAGTGTACAAACAGGCAATGGAAGTATATCTCGCAAGAAAGGCATCATTGTTCATCTCATGCACTCCTGCCGAGAGAAGGAGATGAAGTTTCTTGTTCGGACCTTGGTTAGGAACTTAAGGATTGGGGCCATGCTTAGAACTGTTTTGCCTGCATTGGCTCATGCTGTTGCTATGAATTCTAGCCCTACTTTTCACCAAGGAGGAACTGCAGAAAATTTGAAGGAGAAGCTTCAGGTTCTTTCTATGGCAGTTGTTGAAGCATATAACATACTGCCAAATCTGGATCTAATAGTTCCATCTCTCATGAACAAAGGCATTGATTTTTCGGTTTCAAGTTTATCAATGGTTCCAGGAATACCAATTAAGCCTATGCTAGCAAAGATCACCAATGGTATTCCTCAAGCACTGAAGCTATTTGAAAATAAAGCATTTACATGTGAATATAAGTATGATGGTCAGCGGGCCCAAATTCACAAGTTAGTTGATGGATCGATTCGTGTTTTTTCTAGAAATGGGGACGAAACAACTTCAAGATTTCCTGATCTGATTGACATAATCAAGGAATCCAGCAAGCCTGTTGCATCAACTTTTGTAATGGATGCGGAAGTTGTTGGTATAGACAGGAAAAATGGATGCAGGATTATGTCTTTCCAGGAGCTATCATCACGTGGGAGAGGTGGAAAAGATGCGTTAGTTACAGCAGAGAGCATCAAGTTAATCAATGATGATCAAACATATGAATCTCAAATTAAACGCAAAGTAGGTTATTGGGTTTTCCTCTACGCCTTAGACGAAAATCTGAAGGATTTATTCTATGATGAGAAACCTGGGTATTTTGAATATGCAAAGGAAACAACTATTGAAGCAGATGATGCTTGCTTAGCTTGCGAAGCCACATTAACTAAGATAAATACTTTCCTGGAAGAGGCAATCCACTCTTCATGCGAAGGAATTATGGTGAAAACATTGGATGTTGAGGCTGGCTATTTTCCATCAAAGCGTTCTGATAAATGGTTAAAAGTCAAGCGAGATTATGTGGAAGGATTAAATGATACTCTTGATTTAGTACCGATTGGTGCTTGGCATGGAAATGGAAGGAAAGCTGGATGGTATAGTCCATTTCTTGTGGCGTGTTTCAATCCGGAAACAGAGGAGTACCAAAGTGTATGTCGTGTGATGTCTGGATTCTCAGATTCATTTTATATAGAGATGAAAGAATTCTTCTCTGGGGACAAAGTATTGTCCAAAAAACCGCCATATTATCAAACAGGAGAGGCACCAGACATTTGGTTTTGTCCACAAGTCGTTTGGGAAATAAAAGGAGCAGACTTTACAGTATCCCCAGTTCATCATGCTGCAATTGGTTTAGTTCATCCATCTCGTGGCATTTCAATCAGATTTCCAAGATTTATTTGCTGTGTCTCAGACAGAAACCCAGAAGAATGTAGCACAGCTTCCGATATAGTTGAAATGTTTCATTCTCAGACTCGGAAGATGGATGTCACGGCTAAATAG 4110 0.4326 MDSETLDSTQLFLTALKTLQPDPPPPASTSLSPFPSSLPHSKLIPHTRFLVDAFRHAGPYSHSYFLSHFHSDHYTGLSASWSRGVIFCSATTASLLRNILHVPAALVVPLPLRQTLCIDGAQVTLLDANHCPGAVQFLFAIPCADGTAALRYVHTGDFRFSSSMVSEPALASFVGADAVFLDTTYCNPKFVFPSQEESIDYVASVVERVERECGDSNDKVLFLVATYVIGKEKILLELARRFKRKIHVDARKMEVLRVLGYGESGEFTENGLESNIHVVGWNVLGETWPYFRPNFVKMKEVMAERGGSYSRVVGFVPTGWTYEVKRSRFAVKCKDSFQIHLVPYSEHSNYDELREYVKFLKPKRVVPTVGLDVEKSDSKHANRIMKHFAGLVDETANKHEFLRGFCRGLGEVGFKAEKGVSDVLEPGQGMGKEVIPLEEVEGDKSIDPGVAVGLHSFMGDTCTEDPTLLTDEEKEKIIRELSCSLPTWVTRDQMLDMISISGSNVVEAVSNFYERETEFHEQVISCQTPVSTSKCCTLNDTDSFAKPSLNNANNTSKNINIFPSQDSKSTILRHKLPSPVSPAKRKRSSGSKPNKKGKVKAKSEPSDSKQSTLTRFFKKVIPEIPGGTQSDNSEPKLEQSSEVEDLLPTDVGQIYKDEIDQFLQIINGNESLKNHAMTIIKKTKGDVNKALDIYYCNSGNLSENELSVQEESQIDRPLVKKHASEELRIMPDISGQKVLKDNVDATQLSLPPEKYNPIEHDHCLYAMFLSHSLLALSPADVLPAVYLCTNKIAADHENKELNIGGSLVTAALEEACGTNRLKIREMYNKFGDLGDVAQECRQTQRLLAPPTPLLIKDVFSALQKISVQTGNGSISRKKGIIVHLMHSCREKEMKFLVRTLVRNLRIGAMLRTVLPALAHAVAMNSSPTFHQGGTAENLKEKLQVLSMAVVEAYNILPNLDLIVPSLMNKGIDFSVSSLSMVPGIPIKPMLAKITNGIPQALKLFENKAFTCEYKYDGQRAQIHKLVDGSIRVFSRNGDETTSRFPDLIDIIKESSKPVASTFVMDAEVVGIDRKNGCRIMSFQELSSRGRGGKDALVTAESIKLINDDQTYESQIKRKVGYWVFLYALDENLKDLFYDEKPGYFEYAKETTIEADDACLACEATLTKINTFLEEAIHSSCEGIMVKTLDVEAGYFPSKRSDKWLKVKRDYVEGLNDTLDLVPIGAWHGNGRKAGWYSPFLVACFNPETEEYQSVCRVMSGFSDSFYIEMKEFFSGDKVLSKKPPYYQTGEAPDIWFCPQVVWEIKGADFTVSPVHHAAIGLVHPSRGISIRFPRFICCVSDRNPEECSTASDIVEMFHSQTRKMDVTAK 1369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00095 1369 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 278 1362 - -
Vian2g00095 1369 CDD SNM1A-1C-like_MBL-fold 28 188 - -
Vian2g00095 1369 MobiDBLite consensus disorder prediction 548 574 - -
Vian2g00095 1369 Gene3D - 763 990 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vian2g00095 1369 CDD Adenylation_DNA_ligase_I_Euk 979 1210 - -
Vian2g00095 1369 Gene3D DNA ligase/mRNA capping enzyme 1017 1147 - -
Vian2g00095 1369 SUPERFAMILY Nucleic acid-binding proteins 1216 1360 IPR012340 -
Vian2g00095 1369 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 770 971 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vian2g00095 1369 Gene3D - 1212 1368 IPR012340 -
Vian2g00095 1369 Pfam ATP dependent DNA ligase domain 988 1207 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vian2g00095 1369 MobiDBLite consensus disorder prediction 548 644 - -
Vian2g00095 1369 Pfam ATP dependent DNA ligase C terminal region 1233 1338 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vian2g00095 1369 NCBIfam ATP-dependent DNA ligase 800 1357 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vian2g00095 1369 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 982 1213 - -
Vian2g00095 1369 Gene3D - 44 369 IPR036866 -
Vian2g00095 1369 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 1012 1020 IPR016059 GO:0003909
Vian2g00095 1369 FunFam DNA ligase 6 44 209 - -
Vian2g00095 1369 ProSiteProfiles ATP-dependent DNA ligase family profile. 1167 1245 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vian2g00095 1369 CDD OBF_DNA_ligase_I 1216 1359 - -
Vian2g00095 1369 FunFam DNA ligase 1212 1369 - -
Vian2g00095 1369 Pfam DNA repair metallo-beta-lactamase 265 370 IPR011084 -
Vian2g00095 1369 FunFam DNA ligase 191 347 - -
Vian2g00095 1369 Gene3D - 999 1211 - -
Vian2g00095 1369 Pfam DNA ligase N terminus 772 918 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vian2g00095 1369 Gene3D - 191 347 - -
Vian2g00095 1369 SUPERFAMILY Metallo-hydrolase/oxidoreductase 47 370 IPR036866 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00095 Vian-Chr2 952085 964732 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00095 771 1360 Core DNA Replication Machinery Family AT1G08130 36.409 3.18e-130 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00095 - - gmx:100807673 2253.02