Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00089 ATGTTACCCAATTCTGTGTTGAGACCTTCTTGTACAATGTCTGGATATCTTCAAGAAGATAGAGAGGTAAGCAATTTCAATCTACCATTGGATTGCAATAACAATTCAGTTCCATCAAATTCCATGTCCATGACTCCTTATACGATGCCTCAATTTCGTCAAGACAGAGAGGGGAGTAATTGCAATCAAGCAATGGATTTCCATAGTAATTCTGTTTCATCAAATGTTGTCTCAAATTCTATGTTAGTGCCCTCTTGTCCTATACTTCATTATCATCAAGAAAAAGATAGAGAGCGGAGAAACACTTTCAATCTACCATTGGAATTCAACAGTAATTCAGCTTCAACAAATGTGTCGAATTCCAGTTCAATGCCCTCGTATCCAGTGCCTCAGTATCGTCCACAAAATATACAGCAGGAGGGGAAACTCAGATCCTTCTGGGAGAAGCAGTTGATGGATATTCAAGCTGCTGAAGCATTTAAGAGCCAGCACAAGTTGCCGTTAGCTCGAATCAGAAGGATAATGAAAACAGACGCAGATGTGCAGGTTTATAGTTCTGATTCTGCCACATACTCTATGGTGAGTGCTGAAACTCCCATGCTGATGTCAAAAGCATGTGAGATTTTCATCCAGGAACTCACTTATCGTGCCTGGATGCGTGCTGAAGAGAGCAACAAAAGTACTGTGCAGCCATGTGACGTTGCTAAGGTTATTATGCAGAATCATGCCATGCAATTCCTCACTGATATTGTCCCAGATAACCTCCAAAATTTCTGTGCTTATGGTGCTCAGGAAGAGCGTACTGCTGGAAACATTGCAGAAGGAAGGCATCCAAGCCAAGCTACCCTGCCTGACACAGCTGGTTTTATGGGAAATCCTATGAATGTGATGAATATGGGCAGAGTAAGGCTTGGAGGCAGGAAACCAGCTGATTCCTCAACCCAACAACATGATGCAGCCTCCCTTTGTTATGCCTTCAGATCAATTTCCTTACAATTTTCATCCCAAGTGAACTTAGGGATGCACTACGGGGAGATGAATGAAGTGATGGTGTGCTCCAGAACTATGTCTTCTCTTGAGGAACTAGAGCAACAATTTACATTATTAATTCTCCTCAAACAACTCCTCAACCTTTTCTCTGTTTTGGGAAACATTATCCTATTAAAGTACTTGACATCTTCATGTTTGAACATCCAATAG 1200 0.415 MLPNSVLRPSCTMSGYLQEDREVSNFNLPLDCNNNSVPSNSMSMTPYTMPQFRQDREGSNCNQAMDFHSNSVSSNVVSNSMLVPSCPILHYHQEKDRERRNTFNLPLEFNSNSASTNVSNSSSMPSYPVPQYRPQNIQQEGKLRSFWEKQLMDIQAAEAFKSQHKLPLARIRRIMKTDADVQVYSSDSATYSMVSAETPMLMSKACEIFIQELTYRAWMRAEESNKSTVQPCDVAKVIMQNHAMQFLTDIVPDNLQNFCAYGAQEERTAGNIAEGRHPSQATLPDTAGFMGNPMNVMNMGRVRLGGRKPADSSTQQHDAASLCYAFRSISLQFSSQVNLGMHYGEMNEVMVCSRTMSSLEELEQQFTLLILLKQLLNLFSVLGNIILLKYLTSSCLNIQ 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00089 399 SUPERFAMILY Histone-fold 109 246 IPR009072 GO:0046982
Vian2g00089 399 Gene3D Histone, subunit A 130 253 IPR009072 GO:0046982
Vian2g00089 399 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 139 265 - -
Vian2g00089 399 FunFam Nuclear transcription factor Y subunit C 131 253 - -
Vian2g00089 399 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 165 237 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00089 Vian-Chr2 898319 901742 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00089 145 293 CCAAT-HAP5 Transcription Factor Family AT1G54830 38.816 3.04e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vian2g00089 CBFD_NFYB_HMF 7e-11 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00089 - K08066 gsj:114370134 167.548