Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00080 ATGGAGCTCTTCATAGCTCCAACTTCAAGCGGAGATACTTTTGCATCAACTACTATCACGTCGCAAAGTCTATCTTCTTACCAATCTTCCAATCCAGTAACCAGGAGTTACTACTTTGGTGTCCAGGTCTTTACCTATGAGGAATTGGAGGAAGCTACCAAAAACTTTGATGCTTCTAGAGAACTTGGTGAGGGAGGTTTCGGCACTGTTTACAAAGGTGAACTCAAAGATGGACGTACAGTTGCAGTGAAACGCCATTATGAAAGCAACTCTAGGCGTATTATGCAGTTCATGAATGAAGTTCAGATTCTAGCCCGCTTAAGGCACAAGAACCTTGTGACACTCTTTGGATGCACCTCTAAACATAGCAGAGAACTTCTCCTTGTCTATGAATTCATACCTAATGGAACAGTGGCTTATCATCTTCAAGGAAGAGGCTCAAAATCAACTTTACTCCCTTGGCCTATAAGATTGAACATTGCTGTTGAAACAGCTGAGGCTCTAGCCTACCTACATGCAAACGATGTCATACACCGCGATGTTAAAACCAACAACATTCTCTTGGATGATCAATTTTGCGTCAAGGTTGCTGATTTTGGTCTCTCGAGGGATTTCCCAATCGATGTCACTCATGTGTCAACAGCTCCACAGGGAACACCTGGTTATGTTGACCCTGAATATTACCAGTGCTACCAGCTCACTGATAAAAGTGATGTTTACAGCTTTGGAGTGGTTTTGGTTGAGCTTATATCATCACTGCAAGCTGTGGACATCTACAGGAATCGCAGTGATGTGAACTTGTCAAACATGGCTATAAAAAAAATTCAAAACCAGGAACTGCATGAATTGGTCGATCCTTATCTTGGGTTTGAGAAGGATCCTGCTATGAGGAGGATGATAACAGCAGTGGCAGAATTGGCCTTTAGGTGTTTGCAACAGGAAAGAGATTTGAGACCATGCATGGATGAGGTGGTGGAGATCTTAAGAGGAATCAAGAGTGATGGGCTTGGTGCACGAGAAGAGACAGAAATATTGGATATAAGGACTGATGAAGCTATACTTTTGAAGAAGGCTCATTCTCCTGTTTCACCAAATTCAGTTGTTGACAATTGGGTTAGCGGTTCCTCTGTATCTAATTCCTCATAG 1146 0.425 MELFIAPTSSGDTFASTTITSQSLSSYQSSNPVTRSYYFGVQVFTYEELEEATKNFDASRELGEGGFGTVYKGELKDGRTVAVKRHYESNSRRIMQFMNEVQILARLRHKNLVTLFGCTSKHSRELLLVYEFIPNGTVAYHLQGRGSKSTLLPWPIRLNIAVETAEALAYLHANDVIHRDVKTNNILLDDQFCVKVADFGLSRDFPIDVTHVSTAPQGTPGYVDPEYYQCYQLTDKSDVYSFGVVLVELISSLQAVDIYRNRSDVNLSNMAIKKIQNQELHELVDPYLGFEKDPAMRRMITAVAELAFRCLQQERDLRPCMDEVVEILRGIKSDGLGAREETEILDIRTDEAILLKKAHSPVSPNSVVDNWVSGSSVSNSS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00080 381 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 376 IPR044652 GO:0004672
Vian2g00080 381 SUPERFAMILY Protein kinase-like (PK-like) 30 331 IPR011009 -
Vian2g00080 381 Gene3D Phosphorylase Kinase; domain 1 28 132 - -
Vian2g00080 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Vian2g00080 381 FunFam Wall-associated receptor kinase-like 20 133 341 - -
Vian2g00080 381 ProSitePatterns Protein kinases ATP-binding region signature. 62 84 IPR017441 GO:0005524
Vian2g00080 381 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 29 132 - -
Vian2g00080 381 ProSiteProfiles Protein kinase domain profile. 56 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00080 381 Gene3D Transferase(Phosphotransferase) domain 1 133 338 - -
Vian2g00080 381 SMART serkin_6 56 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00080 381 Pfam Protein tyrosine and serine/threonine kinase 59 328 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00080 Vian-Chr2 828076 829370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00080 38 381 Receptor kinase-like Gene Family AT1G25390 61.756 2.99e-148 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vian2g00080 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00080 - - var:108321622 649.818