Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00055 ATGGCTTCTTTCACTACTTCACCTTCACTGGTTGGGAAGAAGAAGGTTTTGTTCATAATGGGTGCAACCGGCTCAGGCAAGACCAAACTCTCCATCAGCTTGGCCATGCAATTTCCCTCTGAAATCATCAACTCCGACAAAATCCAAGTTTATAAGGGTCTCGACATCATCACCAACAAGGTTTCAGAGTCTCAACGTTCTGGCATTCCTCATCACCTTCTTGCCATCATTGACGACCCTGATTACGATTTCACCATTGATGACTTCTGCAACCATGTCCTTCACGCTCTTGATATCATCGTTCAAAACGGACACCTACCCATTATCGTGGGTGGCTCCAACACTTACCTCACAGCCTTGCTTGAGGACCCTGACGTTGCTTTTCGATCCAAATATGATTGTTGTTTCATCTGGGTCGATGTGTCGTTACCGGTGTTGTTTCCGTATCTGGACAAAAGGGTGGACGAAATGGTTGATGCAGGAGTTGTGGATGAGATTCGAGAAGCTTTTGTTGCTGGAGCAGATTGCAGTCGTGGGATTAGAAGAGCCATTGGAGTTCCTGAGCTTGGAGAGTTTTTCCTTCTGGAGAAGGAAATAGACGATGAGGCTCAGAAGGAGAAGATTTTACAACATGCTATTATGAAAACCAAAGAGAACACTCATAAGTTGGCTGAGAGACAACTCTCGAAGATCCGAAACATGAACCATGACTTCAAAATGTTCATAATTGATTCCACACAAGTGTTTGAGGCTGTTTTGAATGGAGTGAATTATGAGCAATTGTACGAGGAGATTGTGTTCAAACCGTGCATGGAGATAGTGAAGCAATTTCTAGAAGAGACAACTGATGTGAACAAGACACATCTCGAAATGGTGAACAAGCCGTAG 888 0.4403 MASFTTSPSLVGKKKVLFIMGATGSGKTKLSISLAMQFPSEIINSDKIQVYKGLDIITNKVSESQRSGIPHHLLAIIDDPDYDFTIDDFCNHVLHALDIIVQNGHLPIIVGGSNTYLTALLEDPDVAFRSKYDCCFIWVDVSLPVLFPYLDKRVDEMVDAGVVDEIREAFVAGADCSRGIRRAIGVPELGEFFLLEKEIDDEAQKEKILQHAIMKTKENTHKLAERQLSKIRNMNHDFKMFIIDSTQVFEAVLNGVNYEQLYEEIVFKPCMEIVKQFLEETTDVNKTHLEMVNKP 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00055 295 Gene3D - 13 278 IPR027417 -
Vian2g00055 295 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 13 278 IPR039657 -
Vian2g00055 295 Coils Coil 214 234 - -
Vian2g00055 295 Pfam IPP transferase 49 123 - -
Vian2g00055 295 Pfam IPP transferase 130 233 - -
Vian2g00055 295 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 176 IPR027417 -
Vian2g00055 295 FunFam Adenylate isopentenyltransferase 5, chloroplastic 143 242 - -
Vian2g00055 295 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 143 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00055 Vian-Chr2 549584 550471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00055 97 286 C2H2 Transcription Factor Family AT2G27760 30.734 9.76e-16 75.1