Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00020 ATGGCTTCATCTTTGGAAGAGCTTCTTGCAGAAGACGGGTTCAAAGGAATCAGAAGAGTGCCAAGGTCTAGATCCTCCTTCCACTATGGTGCTTCAAGTGAACCTCTTTACTCTATGGAAGGTAGACTTTGTGTATCAAGTGAAAGAATTCGACCGCAGAGACAAAAGTCTGATGCCTCAAGATATCAGATTACAAGTGGGCAGCAGAAAACCGACACTCATACTGCAAAGAACCGAAGATCAAGGGATAATGTTATTTTCAGAGGAGAAATGGATGAACGGTTGGAGGTTGAAGCCCAGAAGAACTCTTCTCGAGATACTGATTCAGGTGAAGAAGTTCATACCAAATCGTCAGAATACATGCCAAGGGATGAAATCACTGAGGTGATGGAACCAGAAGCTAGCAGATTTGAAGATACTTATTCAAAAGAAGTGTCTGCCAAAGGAGGCAAAGAAAAGAATATCTATGAACTCGTGGAGGACAAAAAATGGGCGGAAAAGCCTGCCAAGGATGCAAAGGTGCAAAGCAGAAGTTCCAGCATGCACATGCGTAGACATTTGAGCGAAACTGGAAAGAAAATAAATCCCCAGAAGAGCTTTGAATACAGCAGCAGGAACAAAAGTAGAAATCTTGCCGTGCAAGTAGCTTCTAGTCTTGCTCTTGATGAAGTAGCTGTTCAAGCCGTAGTTTCCATTCTAAATGGGTATATAAATCGTTTTCCAAAGGATGAGGATTTTCGGTCTACATTGCATCACAGATGTTTCTCCTCCTTGAATTTTCTTGAATTGAAAGAAGAGAAAATTGCTCAGAACAAAGTCATAAGAAGTCTTGAGCAAGCAATTGAGGCCATTGAACAATCCGTGGAGGAACCTGTATCTGCCATGTATCTGAAAAGAACAACGATGCAGCTTAGTATTATCACAGGTTTGGGTTTAAATGATTTGAAATACGATTGTACGTGTGGGATTCCGAATTATAAGTTGTCAGCATGTGCTCATCTTTACCTCAGTGTGGTCTACATGATGCAGAAAAAAAATAAGGTGTCAGCAAAGCATCTCTTGCAAGTGTTTTGTGATTCACCCTTTCAGGCACGGACTATGTTGTTTCCTGAACTGTGGAAGCATCTATTTTCTCCACAACTTTCTCATTTGAAGGCATGGTACAAGAAGGAAGAAGGAGTTCTAGTAGACACACCAAACAAAACAAGAAGACTAAAACTTCTTCAAGAGGTGTATAATGAGCATTTGGATTCTGGAACTCATATATTTTCTGTATATTACAAAGATTGGCTTACTGAAGGAGTGGAATCTCCAACAGTTCCTTCAATTGGAATTCCATCAGTTTCTGTCTCAAGAAGTCAAGAGGGAAGTTCACTTGGTCACTCTTTTGAGTCTGCTAGCTCCATTGACCCATTCTCACCACAGCCAATGGTCAGCAAGAAACTGTATGATTCTATGTTTGGTAGCTTTAGAAGATCAGGAGTTTACCAAGTCAAAGATGTTAAGGATGATGGTAACCAAGACAACTGCATGAAAGGCTCTTATGGTTCAACATTTGTTGAACAGACATTAACATATGAGTCTGAAACTGTTAAATTTACAGATCAAGATATTGAAGGTTTCTCTCAAGGTGTAGCTATTGATACAATCAAGCCTCACAAAGGAAATTCAATGGAAGCTGCAGAAGAAGTGCGGAAAAGGAATGTCAGTGATGAAATTAGTAACTCTTTCTCTATGCAAACTAATTTAAACAATCACACTGTTGATGCCCTACCATACCAAAAAGCAAATGAACTTGGTCTTAAAAAGATAGCATATTCTATTAAATATTGGATTGTACATGAAAATATTGGTGCAGGATTAGATTTTCCAAGCACTCCACCGGAGTTTATTTGTTCTCTAACTGGAAATCTCTTTGAGGAACCGGTCACCCTAGAGACAGGTCAAACCTTTGAAAGAGAGGCCATCAAAGCATGGTTTGAAAAGGGAAATAGAACATGCCCGGTAACAGGTATTGCCTTGGAATGCGTGGCCATTCCATTTACCAACCTTATTTTGAAGCGTTTGATTGATAATTGGAGGTCAGATCGTTTTGATTGCCTTCTTGGTCTTGCTTCCAAAAGAGTGGAGAATTCAGAGGATCTCAAGTTGAAAGAAGGAGACGAGGCTGCTGTTTTCAAGTTAGAGAGTCTTTTCTCCTCTCTGAAAGAAGAGGAGAAATCAACTTATGTTAAGCATCTCATGTCTTTAGGATTTCTTCCATTTCTTTTTAGAAGGTTTGAACAGGGAAATGTGGAAGAAAAATCACAAGTGGTGTCACTCTTGCTAAATTGTATTCAAGTAGACTCTGGTTGCATATATAAGATAGCAAGGAATGTTAACAGAAAGTGTCTTCTCGAGCTTCTTCACAGCAAGGAGGTTACCCCAACAACAAATGCAATACTATTCCTTACTGAACTTTTATCAATGAAGAGGAGAAAGGATGTTACTTCATTCATAAGTGGCTTGGCGGGTGAAAAAGTATTTTATATAATGCATATTCTGCTCATGTATCTCGAGAATTCTTCTCCATTTGAAAAGCCCCTAATTGCAGTCCTTTTGTTACACTTTGATCTGCTGGTTGAGCCGCAAAAGTTTAGCGCATACAGAGAGGTGGCTGTGAATGCCATTGCAGAGGCACTTGATAGCAGCTTAAACGATGAGAAGGCCCGAGAAAAGTGTTGCAGAGCACTTTTAATCTTGTGTGGCCATTTTTCTTCTACCGGAAAGATACCAACCAAGACTAGCACCTTAAAACAAGCAGGTTATAATCATGATGGCATAGAAGTAACCATTTCATTGGAAGATGAAGACAAAAGGGTTGAAGAGTTGCTAAGGAAGCTGTTAGAGTCATTGATTGGTGATGGAGAAGGCCCATTTTTGAAGAGCTTATCGAGATGTTTAGATTGTAAGCACCTAGATTTGGTGAGGGCGTGTCTAATAACTGTGACATGGTTGAGTTCTTCACTATCTACACTATTTGGTGCTGGATTGCCTCTTCCCACCTTCTCATCCATCATCTCTCAGTTGAAAGGAATCTTGGAAAATGGAGAACTTGAGCTCAAGGCTCTGGCTTCTTTGTCTTTGCTTAATTTCAGTAAAATATCAGAATGCAAAACGCTTTTGAAGACGGCAGAAGATGTTGCCCCCCTTTTTCACGGACTTGCTGAGGCAGCATGCACTGCAAAACAACTGCATGCCACTGTTTCTAGAGAGAATTTGTAG 3264 0.401 MASSLEELLAEDGFKGIRRVPRSRSSFHYGASSEPLYSMEGRLCVSSERIRPQRQKSDASRYQITSGQQKTDTHTAKNRRSRDNVIFRGEMDERLEVEAQKNSSRDTDSGEEVHTKSSEYMPRDEITEVMEPEASRFEDTYSKEVSAKGGKEKNIYELVEDKKWAEKPAKDAKVQSRSSSMHMRRHLSETGKKINPQKSFEYSSRNKSRNLAVQVASSLALDEVAVQAVVSILNGYINRFPKDEDFRSTLHHRCFSSLNFLELKEEKIAQNKVIRSLEQAIEAIEQSVEEPVSAMYLKRTTMQLSIITGLGLNDLKYDCTCGIPNYKLSACAHLYLSVVYMMQKKNKVSAKHLLQVFCDSPFQARTMLFPELWKHLFSPQLSHLKAWYKKEEGVLVDTPNKTRRLKLLQEVYNEHLDSGTHIFSVYYKDWLTEGVESPTVPSIGIPSVSVSRSQEGSSLGHSFESASSIDPFSPQPMVSKKLYDSMFGSFRRSGVYQVKDVKDDGNQDNCMKGSYGSTFVEQTLTYESETVKFTDQDIEGFSQGVAIDTIKPHKGNSMEAAEEVRKRNVSDEISNSFSMQTNLNNHTVDALPYQKANELGLKKIAYSIKYWIVHENIGAGLDFPSTPPEFICSLTGNLFEEPVTLETGQTFEREAIKAWFEKGNRTCPVTGIALECVAIPFTNLILKRLIDNWRSDRFDCLLGLASKRVENSEDLKLKEGDEAAVFKLESLFSSLKEEEKSTYVKHLMSLGFLPFLFRRFEQGNVEEKSQVVSLLLNCIQVDSGCIYKIARNVNRKCLLELLHSKEVTPTTNAILFLTELLSMKRRKDVTSFISGLAGEKVFYIMHILLMYLENSSPFEKPLIAVLLLHFDLLVEPQKFSAYREVAVNAIAEALDSSLNDEKAREKCCRALLILCGHFSSTGKIPTKTSTLKQAGYNHDGIEVTISLEDEDKRVEELLRKLLESLIGDGEGPFLKSLSRCLDCKHLDLVRACLITVTWLSSSLSTLFGAGLPLPTFSSIISQLKGILENGELELKALASLSLLNFSKISECKTLLKTAEDVAPLFHGLAEAACTAKQLHATVSRENL 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00020 1087 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 626 698 IPR013083 -
Vian2g00020 1087 CDD RING-Ubox_PUB 627 675 IPR045210 -
Vian2g00020 1087 SUPERFAMILY ARM repeat 717 1056 IPR016024 -
Vian2g00020 1087 Gene3D - 718 1080 IPR011989 -
Vian2g00020 1087 MobiDBLite consensus disorder prediction 47 148 - -
Vian2g00020 1087 PANTHER OS04G0584500 PROTEIN 624 1085 - -
Vian2g00020 1087 MobiDBLite consensus disorder prediction 73 148 - -
Vian2g00020 1087 ProSiteProfiles Zinc finger SWIM-type profile. 304 342 IPR007527 GO:0008270
Vian2g00020 1087 MobiDBLite consensus disorder prediction 13 33 - -
Vian2g00020 1087 MobiDBLite consensus disorder prediction 57 72 - -
Vian2g00020 1087 SMART Ubox_2 629 693 IPR003613 GO:0004842|GO:0016567
Vian2g00020 1087 Pfam U-box domain 627 695 IPR003613 GO:0004842|GO:0016567
Vian2g00020 1087 SUPERFAMILY RING/U-box 620 695 - -
Vian2g00020 1087 ProSiteProfiles U-box domain profile. 625 700 IPR003613 GO:0004842|GO:0016567
Vian2g00020 1087 MobiDBLite consensus disorder prediction 167 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00020 Vian-Chr2 174413 180267 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00020 622 897 U-box Gene Family AT1G23030 25.249 1.70e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00020 - - vra:106758533 1811.96