Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00013 ATGGGTTGCTTTTCCTGTTTCGATTCGAGTTCAAGTTCGAGGGAGAATCACAACCTCCGTTCTCACCACCACCCACAACCCAATTCCAATTCCAATTCCAATCCCAATCCCAATATCAATCTGTCTCTCCCTTCTCAGATTTCCAAGTTGCCATCTGGAGCAGACAAGTTACGGTCCAGAAGTAATGGAGGTTCCAAAAGGGAATTGCCTTCTTCCAACACCAAGGAAGGACACGGACCCGCCGTCCAAATCGCTGCTCAAACTTTTACTTTCCGTGAACTTGCTGCTGCAACCAAAAACTTTAGGCCAGAATCCTTTGTAGGGGAAGGTGGTTTTGGAAGGGTCTACAAAGGCAGGCTTGAAACCACTGGTCAGATTGTTGCAGTCAAACAGTTAGACAAAAATGGTCTACAGGGTAATCGGGAATTCCTTGTAGAGGTTCTCATGCTCAGTCTTCTGCATCACCCTAACCTTGTGAATCTCATTGGATACTGTGCGGATGGGGAACAACGCCTCCTTGTTTATGAATTTTTGCCTTTGGGATCATTGGAAGATCACCTTCATGATGTTCCCCCTGATAAGGAACCACTAGATTGGAACACCAGAATGAAAATAGCTGCTGGTGCTGCAAAAGGATTAGAATACCTGCATGACAAGGCAAATCCTCCTGTCATTTATAGAGACTTCAAGTCGTCTAACATATTACTTGACGAAGCATACCACCCTAAGCTTTCTGACTTTGGTCTTGCGAAGCTTGGTCCTGTTGGTGACAAATCACACGTTTCTACCCGAGTCATGGGAACTTATGGTTACTGTGCTCCTGAGTATGCTATGACTGGACAGCTGACAGTGAAGTCTGATGTATATAGCTTTGGGGTTGTCTTCTTAGAGCTTATTACTGGCCGCAAAGCAATCGACAGCACCCAGCCCCATGGAGAACAGAATCTTGTCACATGGGCACGTCCACTTTTTAACGACCGCAGGAAGTTTTCAAAGTTAGCTGATCCTAGGCTGCAGGGACGGTTTCCCATGCGTGGTCTTTACCAGGCTCTAGCTGTTGCGTCAATGTGCATTCAAGAATCAGCTGCCACACGCCCTCTGATTGGAGATGTGGTGACAGCCCTCTCTTATCTGGCCAACCAGGGATATGACCCCAACAATGCTGGCCATGGTTATAGAGGGTCTAGCGATGACAAAAGGAACAGAGATGATAAAGGTGGAAGAATACTTAAAAATGATGAAGCTGGGGGATCTGGACGCAGATGGGACTTGGAAGGATCCGAGAAAGATGACTCCCCACGAGAAACTGCTAGAATGTTAAATAGAGATCTAGATAGAGAACGTGCTGTGGCTGAAGCCAAGATGTGGGGAGAGAACTTGAGACAAAAAAGACAACAAAGTTTGCAGGAGGGCAGTTATGGTTCTACCTAA 1431 0.464 MGCFSCFDSSSSSRENHNLRSHHHPQPNSNSNSNPNPNINLSLPSQISKLPSGADKLRSRSNGGSKRELPSSNTKEGHGPAVQIAAQTFTFRELAAATKNFRPESFVGEGGFGRVYKGRLETTGQIVAVKQLDKNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGEQRLLVYEFLPLGSLEDHLHDVPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEAYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTQPHGEQNLVTWARPLFNDRRKFSKLADPRLQGRFPMRGLYQALAVASMCIQESAATRPLIGDVVTALSYLANQGYDPNNAGHGYRGSSDDKRNRDDKGGRILKNDEAGGSGRRWDLEGSEKDDSPRETARMLNRDLDRERAVAEAKMWGENLRQKRQQSLQEGSYGST 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00013 476 FunFam Serine/threonine-protein kinase PBS1 74 177 - -
Vian2g00013 476 MobiDBLite consensus disorder prediction 460 476 - -
Vian2g00013 476 SUPERFAMILY Protein kinase-like (PK-like) 86 373 IPR011009 -
Vian2g00013 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Vian2g00013 476 MobiDBLite consensus disorder prediction 393 444 - -
Vian2g00013 476 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524
Vian2g00013 476 Pfam Protein kinase domain 104 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00013 476 MobiDBLite consensus disorder prediction 23 49 - -
Vian2g00013 476 Gene3D Phosphorylase Kinase; domain 1 64 177 - -
Vian2g00013 476 MobiDBLite consensus disorder prediction 457 476 - -
Vian2g00013 476 CDD STKc_IRAK 107 375 - -
Vian2g00013 476 PANTHER OS07G0668900 PROTEIN 3 387 - -
Vian2g00013 476 MobiDBLite consensus disorder prediction 385 444 - -
Vian2g00013 476 ProSiteProfiles Protein kinase domain profile. 101 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian2g00013 476 MobiDBLite consensus disorder prediction 1 80 - -
Vian2g00013 476 FunFam Serine/threonine-protein kinase PBS1 178 392 - -
Vian2g00013 476 Gene3D Transferase(Phosphotransferase) domain 1 178 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00013 Vian-Chr2 129031 132269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00013 84 378 Glycoside Hydrolase AT3G07070 74.576 4.59e-166 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vian2g00013 Pkinase 2.9e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00013 K13430 - gmx:100305422 801.586