Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00010 ATGGAAAAACTGAATTTTGTGAAGAACGGGGAGCTCAGATTGCCTCCGGGCTTCCGTTTCCACCCAACCGACGAGGAATTGGTTGTGCAATACTTAAAGCGCAAGGTTTTCTCCTTCCCTTTGCCAGCCTCCGTCATTCCTGAGTTTGATGTTTGCAAGTCTGATCCTTGGGATTTGCCAGGTGATTTAGAGAAAGAGAGGTACTTTTTCAGCACCAAAGAACCCAAATATCCTAACGGCAATCGCTCCAACAGAGCCACCGGTTCAGGTTACTGGAAGGCCACTGGGTTGGACAAACAAATTTTAACTTCAAAAGGGAACCAAGTAGTGGGAATGAAGAAGACACTTGTTTTCTACAGAGGAAAGCCACCTCATGGATCCAGAACCGATTGGATCATGCATGAGTATCGCCTCCTTAACCCTCCGTCTCAGGTTGCCATGGAAAACTGGGTTCTGTGTCGCATATTTTTGAAGAGAAGAAGTGGTTGTAGAAACAGGGAGGAGAAGGAGATGGAGAGTTTGAGAGGCGGAGTGGTTAATAGGAAGGTGAGGAAGTCGAAGATGGTTTTCTATAACTTTTTGGAACAGAGCAAGACCGATTCCTCGTCTTCTTCCGGCAGTGGAATTACTCACGAATCAGATGAGCATGAAGAGAGCAGTAGCTCCGACACCTTCCCTTATTTTAGAAGAAAACCTTGA 699 0.4607 MEKLNFVKNGELRLPPGFRFHPTDEELVVQYLKRKVFSFPLPASVIPEFDVCKSDPWDLPGDLEKERYFFSTKEPKYPNGNRSNRATGSGYWKATGLDKQILTSKGNQVVGMKKTLVFYRGKPPHGSRTDWIMHEYRLLNPPSQVAMENWVLCRIFLKRRSGCRNREEKEMESLRGGVVNRKVRKSKMVFYNFLEQSKTDSSSSSGSGITHESDEHEESSSSDTFPYFRRKP 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00010 232 Pfam No apical meristem (NAM) protein 15 138 IPR003441 GO:0003677|GO:0006355
Vian2g00010 232 SUPERFAMILY NAC domain 10 158 IPR036093 GO:0003677|GO:0006355
Vian2g00010 232 MobiDBLite consensus disorder prediction 197 232 - -
Vian2g00010 232 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 202 - -
Vian2g00010 232 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
Vian2g00010 232 ProSiteProfiles NAC domain profile. 14 158 IPR003441 GO:0003677|GO:0006355
Vian2g00010 232 MobiDBLite consensus disorder prediction 210 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00010 Vian-Chr2 105291 106164 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00010 1 225 NAC Transcription Factor Family AT5G13180 58.167 4.81e-99 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian2g00010 NAM 2.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00010 - - var:108321729 432.18