Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian2g00001 ATGCTCAACGAATCTTCTGGCATTATCTCCCTTCTGCAAGATCTTCATCTCACTCAGTCTTCTTCCAAAGTTCTCTCAGTGTCCTGCCTGCCTTCCAGTCCATCAAGTCATTACCCTCCGAGTTCAAGTTTGCCAACAATCCAAACCCTCTGGTTGTGGAAAAACATGGAGATGTCAAATGTAGACACACCAATCCAATTTGATGAAATGGTTTTGAGAAACATATCAGGATCATCATTGAAGGGGTTTCTTGCACCAGAGTTGGGGAAACTCACCCACTTGCAAGAACTAATTTTGCACGGAAACAATCTCATTGGAACAATACCTAGAGAATTGGGCGACTTGAAATATCTCAGGTCCAACGGGTTGACTGGTAGGCTACCTCCAGAGCTTGGAAACTTGAGATTCCTTCAAGAACTTCAGCTGGATAGGAATAGACTTCAAGGGCCTATTCCTGCTGGCGATAGCTCAAATTTTGCTTCAAATATGCATGGAATGTATGTGTCCAAGGAGAATGTAACTGGCTTCTGTCGTTCGTCTCAGTTGAAAGTTAAGCTTTCAAGGGAATTGCATCCAGAGCCAGGATATAAAGCAGCGACCTCCTATACACGGGTGCTTCTCCTGCCAGTGCCAAGAGTCAGCCAGTGGGATCCAAGTCACCAACTTACTGAATATGTGTCCAAGCATCACGGAGCGTCAAAACCTGTTTGGCTTTTGGCTCTAGAAATAGTAACTGGGACTATGGTGGGCTCTCTCTTTCTGGTTGCTGTTCTTGCTGCTTTTCAGAGATGTAACAAAAAATCATCTATCATTATTCCTTGGAAAAAATCTAGAAGCCAGAAAGATCAGACGCCAGTATATATAGACCCTGAGATGTTGAAGGATGTGAGAAGGTATAGCAGACAAGAGCTTGAAGTGGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGACAGTGTGGTTTACAAGGGAACAATGAAAGGTGGACCTGAGATTGCTGTGATTTCCCTCTGCATCAGGGAGGAGCATTGGACAGGATATCTTGAGCTCTATTTTCAGAGAGAGGTAAATGGAAATTTTCCTATGGCAACAGCCTGCAAGAATTTGCAGGCAGATAGTTGTCCCAATCTTTTAATATTTACTTATGCTATTAATGCCATTCAGGTGGCAGACTTGGCAAAGTTAAATCATGAGAATATAGGAAAACTACTTGGTTACTGTAGAGAAGACACTCTATTTACAAGGATGTTGGTTTTTGATTATGCTTCAAATGGGACACTTCATGATCACCTTCATTGTTATGAAAAAGGATGCCAATTCTCATGGACACGGCGTATGAAGATTGCCATAGGCATTGCGCGTGGACTCAAGTATTTGCATACCGAAGTGGAGCCTCCATTTACTATCTCAGAACTGAATTCTAGTGCTGTATACCTTACAGAAGAATTTTCCCCTAAGCTGGTCGATTTTGAAAGTTGGAAAACAATTCTTGAAAGATCAGAAAAGAATTCTGGTTCCATTGGCAGCCAAGGTGCTATCTGTGTTCTTCCAAACTCCCTTGAAGCACGCCATCTTGATACCAAAGGAAACATATTCGCTTTTGGGGTACTTCTACTGGAGTTAATTAGCAGAAGACCTCCGTACTGTAAGGACAAAGGATACTTGGTTGACTGGGCCAAGGACTACCTCGAAAGGCCAGACGAAATGTCAAGCGTGTTGGATCCTGAACTGAAGCATTTTAGTCATGAAGACCTCAAAGTGATATGCGAGCAAAAGGGGGGACTTAGAGGGCTCGCGCTTTTACAATGTCCAAGCTCATCTCACTTGGATCAGTTACTTGCAGTTCGACTTGAATGCCGTCTAGTTCCCTCTTGA 1881 0.4327 MLNESSGIISLLQDLHLTQSSSKVLSVSCLPSSPSSHYPPSSSLPTIQTLWLWKNMEMSNVDTPIQFDEMVLRNISGSSLKGFLAPELGKLTHLQELILHGNNLIGTIPRELGDLKYLRSNGLTGRLPPELGNLRFLQELQLDRNRLQGPIPAGDSSNFASNMHGMYVSKENVTGFCRSSQLKVKLSRELHPEPGYKAATSYTRVLLLPVPRVSQWDPSHQLTEYVSKHHGASKPVWLLALEIVTGTMVGSLFLVAVLAAFQRCNKKSSIIIPWKKSRSQKDQTPVYIDPEMLKDVRRYSRQELEVACEDFSNIIGSSPDSVVYKGTMKGGPEIAVISLCIREEHWTGYLELYFQREVNGNFPMATACKNLQADSCPNLLIFTYAINAIQVADLAKLNHENIGKLLGYCREDTLFTRMLVFDYASNGTLHDHLHCYEKGCQFSWTRRMKIAIGIARGLKYLHTEVEPPFTISELNSSAVYLTEEFSPKLVDFESWKTILERSEKNSGSIGSQGAICVLPNSLEARHLDTKGNIFAFGVLLLELISRRPPYCKDKGYLVDWAKDYLERPDEMSSVLDPELKHFSHEDLKVICEQKGGLRGLALLQCPSSSHLDQLLAVRLECRLVPS 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian2g00001 626 Pfam Protein tyrosine and serine/threonine kinase 394 550 IPR001245 GO:0004672|GO:0006468
Vian2g00001 626 SUPERFAMILY L domain-like 18 177 - -
Vian2g00001 626 SUPERFAMILY Protein kinase-like (PK-like) 285 570 IPR011009 -
Vian2g00001 626 Gene3D Ribonuclease Inhibitor 119 190 IPR032675 -
Vian2g00001 626 Gene3D Ribonuclease Inhibitor 35 118 IPR032675 -
Vian2g00001 626 Gene3D Phosphorylase Kinase; domain 1 284 423 - -
Vian2g00001 626 SMART tyrkin_6 309 587 IPR020635 GO:0004713|GO:0006468
Vian2g00001 626 Gene3D Transferase(Phosphotransferase) domain 1 424 602 - -
Vian2g00001 626 PANTHER PROTEIN MALE DISCOVERER 2 69 592 - -
Vian2g00001 626 ProSiteProfiles Protein kinase domain profile. 309 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian2g00001 Vian-Chr2 4309 9736 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian2g00001 70 579 Receptor kinase-like Gene Family AT1G55610 27.675 2.45e-34 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vian2g00001 PK_Tyr_Ser-Thr 1e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian2g00001 - - gmx:100794714 791.571