Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04241 ATGGCGGACTCTAACACAAGCTCAGTTGATGTGATTTTGGAGTTTCTTCGGAGGAACCGATTCACGAGAGCCGAGGCAGCTCTCCGCAGTGAGATAAATAATCGCCCTGACTTGAATGGCTTCCTTCAGAAGCTCACATTGGAAGAAAAGGCCTCACGTGATGTGCCTCAAAGTAATAAGGGGAAGCCTATGATTGAGTTTCAAGAGGTGGACACTCTTGAAGTTTCTAAAGAACTGATCGTCACGGAAATCGAGTGTGGGAATGGTCGAAATGCCGCTGAAAGCAAATGGAAAACTGCTGCTCCCACTTTGGTGGAACGGAGTAAATCGGATGAAACGGTTCGAACTAGTGATAAGAACTTCATTTTCTCCAAGACTTCAGAGGATGGGATGCTTGATTTATACTCTTGGAAGTTCAACCCTGGGAAAGCTCCTGTGGAGCCTTACCAAAACGATGCTGGTAGTAGGGCTAATACTATTTTGAGCTTGAATGCCACAGTATCTGAACGATCAAAACGTCAAACTAATGAAGCTGTGGATCTAAGTGTTGCCAATACCAGTTCAATGTCTGGGGAGGAAAATGCTGCTCTTGCTGAAAAAAAATCTCTGTGGTCTGGAAGTAGTAGTAAAACCTCCGTGGATCTTAAGTACGACCTTGCGCAAAGCAAAGAACCTATGGAGCTTGATCGGCAACTTAAATTCAATAGTTCTTCTCTTAAAGGGAACTTTCCAGATAATCCCTGGTCAAAAATGGATGAGAACGTGAATTCGTCTTCAGATTCCTGCAAAAATTGTGTCAAGACGGTTTTCCCCCTCTCGAAAGGGGATGTGTCTTCAAACTTCGATGGTGCCACTTATTCTGACAAAAAAGAGGAGAAAAAAAGGGTAGAAATTAGTGAGGCCAGAACATCCATAAAAGAGCAGGTGGGTGAATCAGGGAGGTCTATTTACTTGGCCAAGACACCTGTCAGTTCTGAACAAAAGTTGATTGGCAGCTTAAGATTTCCTCTTCCACCTGAAAATGAGAAGGAAGAATTTCCCAGGCTTCCTCCAGTTAAACTCAAGTCAGATGATAAGCCCTTGGTTGTTAACTGGGAAGAGAAGTTTGAGCGAGATGGGCCAACTTCAAACCCCCCTGGTACTGACAGCACTTTTCTTATTGGTTCATATCTGGATGTACCTATTGGACAAGAAGTTAATCCTTCAGGTATGAGGAGGGCTACAGGGGGCAGTTGGTTATCTGTAAGTCAAGGGATAGCAGAGGATACATCAGATCTTGTATCAGGATTTGCTACAGTTGGCGACGGGTTAAGTGAATCTATTGACTATCCAAATGAATATTGGGACTCCGACGAATATGATGACGACGAGGATGTTGGGTACATGAGGCAACCTATTGACGATGAGACCTGGTTTTTGGCACATGAAATTGATTACCCTAGTGACAATGAAAAAGGGGCTGGCCATGAAAGTGTTCCGGACCATCAGGAAAGAGGTCTGGCCAAAGATGAGGATGATGATCAATCTTTTGCTGAGGAAGATTCTTACTTTTCTGGGGAGCGATATCTTCAGGAAAATAATGTTGAGCCAGTCACAGCTACTGATGATTCTATTGGTCTGACAGTTACTGAGTATGGAAGGACCAATGATAATGATTTAATGGCTCAATATGATGGACAATTGATGGATGAAGAAGAATTGAACCTTATGTGTGCAGAACCAGTCTGGCGGGGCTTTGTCCCTCAGACTAATGAACTCATCATGCTAGGTGATGGGAGGGTGTTGAATGATAATGTAAGATCACGGCAAGAGAACATCAAAATGGATGATGATCAGCATGGTTCCGTTAGGTCAATTGGGGTAGGGATTAATAGTGATGTTGCAGATATTGGCAGTGAAGTGCGTGAAAGTTTGGTTGGTGGTAGTAGTGAAGGAGATTTAGAATATTTCCATGGTCGTGATGCTGGGCTTGGTAGCAGGCACCCCCATCGTGATTTGGACAAGAAATCTACTAACAAATCAAATGTAAGTAAGAACAATGACCAGAGTGAGTCAAATAAATATGTCATAGGATGTGACAGAGATACACAGTTCCAGATAAAAACTCATGGTGATGGGAACTTCTCTTTTCCCCTATCTTTGAAGGATGGTGATATAATTCAGGCTTCCACCGATAAGTCCCTGTGGTCAAATAACGACAATGCAGATGAAATTGATGACTGTCTTAGTGCATTTGTGGAAACTGATGACATGCTTGCTTCGTGGAGGCGAAAGAGTAGTGATTCATCACCTGCTAGAAGTTCTAGGGGTGATAATAATGCTAACAATGTAAGATCTGCAAACTCTTCTCCAACAACAATTTCAAATTATGGATATTCTGAAAGAGAGCATGTGAAGGTGGAGGAGGATGAAAAAACTGGAATTGCTATGGAAGATGACCTAGGAGCAGAGGATGAAGAGGTAGCTGCTGTGCAAGAGCAAGTAAGACAGATAAAGGCACAGGAGGAGGAATTTGAAACTTTCAATCTAAAGATTGTGCACAGGAAAAACAGAACTGGTTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTAATAGCTGGAAGGTATCATGTTACGGAGTATCTGGGATCTGCTGCATTTAGCAAAGCTATACAAGCTCATGACCTACATACAGGCATGGATGTTTGTGTTAAAATTATAAAGAACAACAAGGACTTTTTTGACCAAAGTCTTGATGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGGAGACAAGTATCACATTCTTCGATTATATGATTATTTCTATTATCGAGAACATTTGTTAATAGTATGTGAACTACTTAAAGCAAACTTGTACGAGTTTCATAAATTTAATAGAGAATCAGGTGGTGAAGTGTACTTTACAATGCCAAGATTGCAGTCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTCTGCATAGCCTTGGACTAATACACTGTGACTTGAAACCAGAGAATATTTTGGTTAAGAGCTATAGTAGATGTGAGGTGAAGGTCATTGATCTTGGAAGTAGTTGTTTTGAGACGGATCACCTTTGCTCTTATGTTCAGTCAAGGTCCTATCGTGCTCCTGAGGTTATTTTGGGACTTCCATATGATAAAAAGATTGATATCTGGTCTCTTGGCTGCATCTTGGCAGAACTTTGTACTGGCAATGTCCTCTTCCAAAATGATTCGCCTGCAACATTACTTGCACGGGTGATTGGGATCATTGGTCCAATTGATCAAGGTATGCTTGCAAAAGGACGGGACACCTATAAGTACTTCACCAAAAATCATATGCTTTATGAAAGGAATCAGGAAACCAACAGGTTAGAATACTTGATTCCAAAAAAGACATCCTTGAGGCATAGATTGCCAATGGGAGACCAAGGCTTCATTGACTTTGTGGCTCACTTGCTTGAAGTCAACCCTAAGGAGCGACCCTCTGCATCTGAAGCCCTGAAGCATCCATGGTTATCGTACCCTTATGAACCCATTTCATCTTGA 3552 0.4181 MADSNTSSVDVILEFLRRNRFTRAEAALRSEINNRPDLNGFLQKLTLEEKASRDVPQSNKGKPMIEFQEVDTLEVSKELIVTEIECGNGRNAAESKWKTAAPTLVERSKSDETVRTSDKNFIFSKTSEDGMLDLYSWKFNPGKAPVEPYQNDAGSRANTILSLNATVSERSKRQTNEAVDLSVANTSSMSGEENAALAEKKSLWSGSSSKTSVDLKYDLAQSKEPMELDRQLKFNSSSLKGNFPDNPWSKMDENVNSSSDSCKNCVKTVFPLSKGDVSSNFDGATYSDKKEEKKRVEISEARTSIKEQVGESGRSIYLAKTPVSSEQKLIGSLRFPLPPENEKEEFPRLPPVKLKSDDKPLVVNWEEKFERDGPTSNPPGTDSTFLIGSYLDVPIGQEVNPSGMRRATGGSWLSVSQGIAEDTSDLVSGFATVGDGLSESIDYPNEYWDSDEYDDDEDVGYMRQPIDDETWFLAHEIDYPSDNEKGAGHESVPDHQERGLAKDEDDDQSFAEEDSYFSGERYLQENNVEPVTATDDSIGLTVTEYGRTNDNDLMAQYDGQLMDEEELNLMCAEPVWRGFVPQTNELIMLGDGRVLNDNVRSRQENIKMDDDQHGSVRSIGVGINSDVADIGSEVRESLVGGSSEGDLEYFHGRDAGLGSRHPHRDLDKKSTNKSNVSKNNDQSESNKYVIGCDRDTQFQIKTHGDGNFSFPLSLKDGDIIQASTDKSLWSNNDNADEIDDCLSAFVETDDMLASWRRKSSDSSPARSSRGDNNANNVRSANSSPTTISNYGYSEREHVKVEEDEKTGIAMEDDLGAEDEEVAAVQEQVRQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVIAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPGDKYHILRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIDQGMLAKGRDTYKYFTKNHMLYERNQETNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKERPSASEALKHPWLSYPYEPISS 1183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04241 1183 Pfam Protein kinase domain 872 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g04241 1183 PANTHER DUAL SPECIFICITY PROTEIN KINASE 411 1174 - -
Vian1g04241 1183 SUPERFAMILY Protein kinase-like (PK-like) 861 1176 IPR011009 -
Vian1g04241 1183 ProSitePatterns Serine/Threonine protein kinases active-site signature. 998 1010 IPR008271 GO:0004672|GO:0006468
Vian1g04241 1183 FunFam Serine/threonine-protein kinase ppk15 951 1175 - -
Vian1g04241 1183 MobiDBLite consensus disorder prediction 755 796 - -
Vian1g04241 1183 Gene3D Transferase(Phosphotransferase) domain 1 926 1174 - -
Vian1g04241 1183 Coils Coil 814 844 - -
Vian1g04241 1183 Gene3D Phosphorylase Kinase; domain 1 866 953 - -
Vian1g04241 1183 FunFam Putative serine/threonine-protein kinase dyrk2 866 953 - -
Vian1g04241 1183 SMART serkin_6 872 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g04241 1183 ProSiteProfiles Protein kinase domain profile. 872 1174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g04241 1183 CDD PKc_DYRK_like 872 1174 - -
Vian1g04241 1183 MobiDBLite consensus disorder prediction 650 687 - -
Vian1g04241 1183 MobiDBLite consensus disorder prediction 482 510 - -
Vian1g04241 1183 MobiDBLite consensus disorder prediction 482 505 - -
Vian1g04241 1183 MobiDBLite consensus disorder prediction 757 792 - -
Vian1g04241 1183 MobiDBLite consensus disorder prediction 650 674 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04241 Vian-Chr1 65270249 65280774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04241 871 1169 MAP Kinase Gene Family AT5G19010 31.034 1.39e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Vian1g04241 Pkinase 3.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04241 - - gmx:100797095 1832.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g01300 1 14038457 14043738 Vian1g04241 1 65270249 65280774 ECH
Vian1g04241 1 65270249 65280774 Vian1g04241 1 65270249 65280774 ECH
Vian1g04241 1 65270249 65280774 Vian8g01343 8 32517264 32523649 PCT