Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04239 ATGGCCTCCCTTGTAAGGATTGACACGTTGCTCAAAACCTCATCTCCCTCCTCTCTTCCCACTTCCCAGCCCTTTTCCTTTGCCCAGAATGCTACCACTCCCACTAATAAAAGAAAGAGAAGGCCTGCAGGAACACCAGATCCAGATGCAGAAGTCGTGTCCCTCTCACCCAAGACCTTGCTTGAATCAGATCGTTTCGTCTGTGAGATCTGCAACCAGGGATTCCAGCGGGACCAGAACCTTCAGATGCACCGGCGCCGCCACAAGGTGCCCTGGAAGCTCTTGAAGAGGGAGACGCCACTGGTGAAGAAGCGAGTCTTCGTTTGCCCGGAGCCTACTTGCTTGCACCATGACCCTTGCCACGCTCTGGGTGATCTTGTCGGCATAAAGAAGCACTTCAGAAGAAAACACAGCAGTCACAAGCAATGGGTCTGCGAGAGATGCTCCAAAGGCTACGCAGTGCAGTCTGATTACAAAGCTCATCTTAAAACGTGTGGCACCCGAGGCCACTCTTGCGATTGTGGCCGCGTTTTCTCAAGGGTGGAGAGCTTTATTGAACACCAAGACGCGTGCAACGTGGGGCGGTTGCGGTCAGAAACGCAGGCAGTGCAAGCTGCTGCATGCTTGTCTCGAACAGCTTCAAGCCCTTCTAGCGAAAACAATTTCAGCACAGGTGCTCCTTTGCAAATCGGTGTAATAATTCGGAAGCTCCCGGAAACAGTAGTAGAACCGGCCTTATTCAGCAACACTACCACGACACAAACCAACAACGACAACAAAGTGAACAAGCTCCAGCCCAACCTTGAGCTTCAGCTCTCTACAGCCCCTCCTATTGAAATGATCGGGGCTGCGTCAGGCACTGGCAATAAGAGAGAGGGAAACCCCTCTGCACAGTTGCAGTTATCGATAGGGTCATTGGAAAAAGGGTGCATGAGGGAGAAGTCATTGGGAGGAAGGTTTGAAGATGAGGCACGTGAGCAGCTGAGGATAGCGGTGGCGGAAAAAGCGTATGCGGAAGAGGCAAGGAAGCAAGCCAAGAGGCAGATGGAGCAGGCGGAACTGGAGTTCACTAATGCCAAAAGGATAAGACAACAAGCGCTAGCGGAACTGGACAAAGCCTGCGCCTTGAAGGACCACGCAATCAAACAGATCCATTCAACTATGCTTCAGATCACCTGCCTTGCTTGCAAGCACCATTTCCAGTCGCCAACCGTAACGTGTACTGCTCCTTCCGACCAGACTTCTTTCGTCTTCAGTTACATAACAACAGACACTGCCCAAGTTGGAAAGCATCGTGTCAAACCCATTAACTCATAG 1317 0.5163 MASLVRIDTLLKTSSPSSLPTSQPFSFAQNATTPTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRFVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPLVKKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSSHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNVGRLRSETQAVQAAACLSRTASSPSSENNFSTGAPLQIGVIIRKLPETVVEPALFSNTTTTQTNNDNKVNKLQPNLELQLSTAPPIEMIGAASGTGNKREGNPSAQLQLSIGSLEKGCMREKSLGGRFEDEAREQLRIAVAEKAYAEEARKQAKRQMEQAELEFTNAKRIRQQALAELDKACALKDHAIKQIHSTMLQITCLACKHHFQSPTVTCTAPSDQTSFVFSYITTDTAQVGKHRVKPINS 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04239 438 FunFam protein indeterminate-domain 12-like 45 113 - -
Vian1g04239 438 Coils Coil 335 369 - -
Vian1g04239 438 SMART c2h2final6 66 88 IPR013087 -
Vian1g04239 438 SMART c2h2final6 107 137 IPR013087 -
Vian1g04239 438 SMART c2h2final6 143 170 IPR013087 -
Vian1g04239 438 Gene3D Classic Zinc Finger 54 139 - -
Vian1g04239 438 MobiDBLite consensus disorder prediction 13 39 - -
Vian1g04239 438 ProSiteProfiles Zinc finger C2H2 type domain profile. 66 88 IPR013087 -
Vian1g04239 438 ProSitePatterns Zinc finger C2H2 type domain signature. 68 88 IPR013087 -
Vian1g04239 438 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 384 IPR031140 -
Vian1g04239 438 SUPERFAMILY beta-beta-alpha zinc fingers 66 88 IPR036236 -
Vian1g04239 438 MobiDBLite consensus disorder prediction 13 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04239 Vian-Chr1 65253838 65255973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04239 33 423 C2H2 Transcription Factor Family AT2G01940 55.147 2.77e-141 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vian1g04239 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04239 K25871 - gmx:100798167 566.614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04239 1 65253838 65255973 Vian1g04239 1 65253838 65255973 ECH
Vian1g04239 1 65253838 65255973 Vian8g01356 8 32682308 32684963 PCT