Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04237 ATGTTGGGTTATATAATTTATGCACTCTGCGCTTGGAAGCAGAAAGAGAGAGAAATGGAAGGAGGATCTGGAGAGAAGTGGAAGACAGTCTACAGAGAGTGCTTGAGAAACCATGCAGCCAGTCTGGGAAGCTACGCCACTGATGGGTGTGGAGAGTTCACGGTGGACGGCGGGGGGCTGCAATGCGTGGCGTGTGGGTGCCACCGGAACTTTCATCGGAAAGTGAAGTATCCTGTGGGTCCGGAAAGTCCTGAAGCCATGGATTACGGTGGTGAGGGAGGGAGTAAGAAGCGGTTCAGGTCGAAATTCAGCGCAGATCAGAAGGAGAAGATGCTGGCGTTTGCTGAGAAACTTGGTTGGAAGCTTCAGAGGAAGGATCTGGATGATGAGATTGAGAGGTTCTGCAGAAGCATTGGAGTTAGTAGGCAAGTTTTCAAAGTTTGGATGCATAACCATAAGAACTCTTCTTCCTCTTCTTCTGCTTCAGCTTCAGCTTCCACAGGAAACATCTCCTCCCTCACCCATTAA 528 0.4962 MLGYIIYALCAWKQKEREMEGGSGEKWKTVYRECLRNHAASLGSYATDGCGEFTVDGGGLQCVACGCHRNFHRKVKYPVGPESPEAMDYGGEGGSKKRFRSKFSADQKEKMLAFAEKLGWKLQRKDLDDEIERFCRSIGVSRQVFKVWMHNHKNSSSSSSASASASTGNISSLTH 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04237 175 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 31 75 IPR006456 -
Vian1g04237 175 MobiDBLite consensus disorder prediction 153 175 - -
Vian1g04237 175 SUPERFAMILY Homeodomain-like 87 154 IPR009057 -
Vian1g04237 175 Gene3D - 83 160 - -
Vian1g04237 175 FunFam Zinc-finger homeodomain protein 2 84 158 - -
Vian1g04237 175 Pfam ZF-HD protein dimerisation region 29 75 IPR006456 -
Vian1g04237 175 NCBIfam homeobox domain, ZF-HD class 96 154 IPR006455 -
Vian1g04237 175 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 31 74 IPR006456 -
Vian1g04237 175 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 21 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04237 Vian-Chr1 65241944 65242471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04237 28 155 ZF-HD Transcription Factor Family AT4G24660 43.275 5.63e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vian1g04237 ZF-HD_dimer 7.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04237 - - vra:106767737 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04237 1 65241944 65242471 Vian8g01359 8 32727232 32727750 PCT