Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04232 ATGGAGTTCGGTTTCTTCAGAGGCTTACCTAACAACATATTTCTCCTGGACATAGCGGGGCAATTGGTGTTTCTGATGGACATGGTGGTGCAGTTCTTGGTGGGCTATCACGAAGTTCACTCCAACTCACTCTCCTTGGTCCTCGACCACTACAAGATCGCCGTCAGGTACCTCAAGTCTCGCTTCGTCTTCGACCTCCTCGCATGTCTCCCATGGGATTTCATCTACAAGCGCACCAACAACAACGAGCTCCTCCGCTCTCTGCTCTGGATCAGACTCGCTCGTGCTTCCCGTGTCACCCAATTCCTCGACACCCTCGAGAAGGATACAAGGATCAATTACTTGTTCACCAGAATCCTCAAACTCTTCGTCGTTGAACTTTACTGCACTCACTCCGCTGCTTGCATTTTTTACTATCTTGCCACCACTCTGCCCTCTTCCCAGGAGGGTTACACCTGGATCGGTAGCTTGAAGATGGGAGACTATGCGTATTCTGACTTCCGACACATCGATCTCTGGAAGCGTTATGTCACCTCCCTCTACTTTGCCGTTGTTACCATGGCCACCGTTGGCTACGGAGAAATCCACGCAGTCAACGTGCGTGAAATGATATTCGTCATGGTTTATGTCTCCTTTGACATGATTCTTGGCGCTTACCTCCTCGGCAACATGACTGCGTTGATCGTGAAAGGGTCTAAGACCGAGAGATTCAGAGATAAAATGTCTGATATTAGTAAGTTCTTCGATAAGAACAAACTGGACAGCCAGATATGTCACCAGATTAAAGATCACTTGAGGTTAAAGTATGATCGAAGTTATAACGGATCTTTTATTCTTCAGGAGATACCAACCACCATTCGCAAGAAGATTTCAATAAGCATGTACGAACAGTTCATTCAGAAAGTTTCTCTTTTCAAGGGATGCTCTTCAGGGTTTATAAAGCAGATCGCAACCAAAGTGGAGGAAGAGTTTTTCCTCCCAGGAGAATTAGTTACGGAGGAAGGAGATGTCGCAGATAAACTCTACTTTGTATATCATGGTGAGATGCGTGAGATGATGAGGGAAGAGGGTGATACAGAAGACAACACTATCACATTGCATACCTATAGTTCTTTCGGCCATGTTTCATTTTTTTGCAATATACCTCAAAGTTCTACAGTTGAAGCTCATGAATTTTGCAAGGTTTTGCGACTTGATAAGAAATCCTTTACTGAAATACTGAAGATATACTTTTTAGATGGTCGTGTTGTGTTGAACAATCTCCGCGAGGTAAAAGACTTAAATTTCCAGCGTAAGCTTTTGTTATCAGACTTCAACCTCACTATTGGAAGCATGGAAATAGAGCTGGCTACAAGGCTCAACTGTGCTGCCCATGATGGTCATCTTGATCTTGTCAAACGTTTGATTGGATTTGGGGCAGATCCCAACAAAACTGATTATGACGGTAGAACTCCCTTGCATATCTCTGCATCAAAAGGATATGTGGATATTTCTTCTTATCTTGTTGAACTAGGAGTATGCATCGATACAGCAGATAAATTTGGCACCACTCCCTTGCTTGAAGCCCTCAAGAATGGACATGAAGATGTGGCATCTGTACTTGTTAACGCGGGAGCTATCCTTGCTATTGAAGATGTTGGCAATTTTCTCTGCACGACAGTTGCAAGGAAGGAGTTTGACTTTTTGAAAAGGGTTCTAGCTTGTGGTATTAATCCAAATGCAAAAAATTATGATCAGCGTACCCCTCTTCACATTGCTGCCTCTGAGGGCTTCTTTACAATGGTTGAGTTACTTCTAGTGGCAGGAGCAAGTGTTTTATCCAAGGACAGATGGGGAAATACACCTCTTCATGAAGCTCATACTGGTGGAAATAGAAATATGATCAAATTGCTTGAAGTTGCTAAAGTTTCTCAGTTGGCTGAATTGTCCGATAATATTCATGAAATTCAAGCAACACCAGTGCTGCAGTCAACAAATGAAATTCCTAAAAAGAGATGCACAGTGTATCCTTTCCACCCATGGGATCACAAAGCGGGTAAAAGAGAGGGAGTGGTCCTATGGGTTCCACAAAGCATTCAAGAACTTATAAAGGAAGCAGGGAAGCATTTGGAAACTACGAACAATTCCTACATTTTGTCAGAAGAAGGTGGAAAAGTTCTTTACGTAGACATGATTAACAACGATGAGAAGTTATTTGTAGTAAGTGAAGCACAAAATGAGGTGAGATGA 2229 0.4302 MEFGFFRGLPNNIFLLDIAGQLVFLMDMVVQFLVGYHEVHSNSLSLVLDHYKIAVRYLKSRFVFDLLACLPWDFIYKRTNNNELLRSLLWIRLARASRVTQFLDTLEKDTRINYLFTRILKLFVVELYCTHSAACIFYYLATTLPSSQEGYTWIGSLKMGDYAYSDFRHIDLWKRYVTSLYFAVVTMATVGYGEIHAVNVREMIFVMVYVSFDMILGAYLLGNMTALIVKGSKTERFRDKMSDISKFFDKNKLDSQICHQIKDHLRLKYDRSYNGSFILQEIPTTIRKKISISMYEQFIQKVSLFKGCSSGFIKQIATKVEEEFFLPGELVTEEGDVADKLYFVYHGEMREMMREEGDTEDNTITLHTYSSFGHVSFFCNIPQSSTVEAHEFCKVLRLDKKSFTEILKIYFLDGRVVLNNLREVKDLNFQRKLLLSDFNLTIGSMEIELATRLNCAAHDGHLDLVKRLIGFGADPNKTDYDGRTPLHISASKGYVDISSYLVELGVCIDTADKFGTTPLLEALKNGHEDVASVLVNAGAILAIEDVGNFLCTTVARKEFDFLKRVLACGINPNAKNYDQRTPLHIAASEGFFTMVELLLVAGASVLSKDRWGNTPLHEAHTGGNRNMIKLLEVAKVSQLAELSDNIHEIQATPVLQSTNEIPKKRCTVYPFHPWDHKAGKREGVVLWVPQSIQELIKEAGKHLETTNNSYILSEEGGKVLYVDMINNDEKLFVVSEAQNEVR 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04232 742 ProSiteProfiles Ankyrin repeat profile. 448 480 IPR002110 GO:0005515
Vian1g04232 742 SMART cnmp_10 304 422 IPR000595 -
Vian1g04232 742 Gene3D - 443 546 IPR036770 -
Vian1g04232 742 Gene3D - 547 651 IPR036770 -
Vian1g04232 742 ProSiteProfiles Ankyrin repeat profile. 514 546 IPR002110 GO:0005515
Vian1g04232 742 ProSiteProfiles Ankyrin repeat profile. 481 513 IPR002110 GO:0005515
Vian1g04232 742 SUPERFAMILY cAMP-binding domain-like 232 422 IPR018490 -
Vian1g04232 742 ProSiteProfiles Ankyrin repeat region circular profile. 514 539 - -
Vian1g04232 742 Pfam Cyclic nucleotide-binding domain 324 408 IPR000595 -
Vian1g04232 742 PANTHER POTASSIUM CHANNEL AKT1 1 737 IPR045319 GO:0005249|GO:0006813
Vian1g04232 742 ProSiteProfiles KHA domain profile. 665 742 IPR021789 -
Vian1g04232 742 ProSiteProfiles Ankyrin repeat region circular profile. 481 513 - -
Vian1g04232 742 ProSiteProfiles cAMP/cGMP binding motif profile. 304 407 IPR000595 -
Vian1g04232 742 PRINTS EAG/ELK/ERG potassium channel family signature 17 27 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian1g04232 742 PRINTS EAG/ELK/ERG potassium channel family signature 176 193 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian1g04232 742 PRINTS EAG/ELK/ERG potassium channel family signature 128 138 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian1g04232 742 PRINTS EAG/ELK/ERG potassium channel family signature 220 229 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vian1g04232 742 Gene3D - 3 230 - -
Vian1g04232 742 Gene3D Jelly Rolls 275 434 IPR014710 -
Vian1g04232 742 SMART ANK_2a 481 510 IPR002110 GO:0005515
Vian1g04232 742 SMART ANK_2a 514 543 IPR002110 GO:0005515
Vian1g04232 742 SMART ANK_2a 448 477 IPR002110 GO:0005515
Vian1g04232 742 SMART ANK_2a 611 640 IPR002110 GO:0005515
Vian1g04232 742 SMART ANK_2a 578 607 IPR002110 GO:0005515
Vian1g04232 742 Pfam Ion transport protein 13 229 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vian1g04232 742 CDD CAP_ED 304 418 IPR000595 -
Vian1g04232 742 ProSiteProfiles Ankyrin repeat profile. 578 610 IPR002110 GO:0005515
Vian1g04232 742 SUPERFAMILY Voltage-gated potassium channels 9 229 - -
Vian1g04232 742 FunFam Potassium channel KAT2 292 428 - -
Vian1g04232 742 SUPERFAMILY Ankyrin repeat 407 631 IPR036770 -
Vian1g04232 742 PRINTS Ankyrin repeat signature 594 608 IPR002110 GO:0005515
Vian1g04232 742 PRINTS Ankyrin repeat signature 482 497 IPR002110 GO:0005515
Vian1g04232 742 ProSiteProfiles Ankyrin repeat region circular profile. 578 610 - -
Vian1g04232 742 ProSiteProfiles Ankyrin repeat region circular profile. 448 479 - -
Vian1g04232 742 Pfam KHA, dimerisation domain of potassium ion channel 664 733 IPR021789 -
Vian1g04232 742 Pfam Ankyrin repeats (3 copies) 455 539 IPR002110 GO:0005515
Vian1g04232 742 Pfam Ankyrin repeats (3 copies) 559 631 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04232 Vian-Chr1 65203037 65207322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04232 558 631 Ion Channels AT5G37500 31.250 2.23e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04232 K21867 - gmx:100798698 1187.94