Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04230 ATGAACTCAATTTCCACGTGTCAGTTGGAGAGCTATCGATTAGAGTCACGCAGGATGAGCTCGCAAGAGCGAAGCCAGCGGTCTAGGGTTCCTCGTCAGGAATGGATTCGTCGAGGATCTACCGATCAGAGTCAGAATCAGAATCAAAATGGTGCCGCCACTGCCGCCGCCACCGCTGCTGGTTCATCCAATACAACAAATCGCCATAGGAGGAGCGGTCCTATTCCTAGTCCCAATCCCAATCCCAATCCTAATCCCAATCCCAATCCCAATCCGAAGAATAATGTGCAGAAGAGATTCAATTCGAGGGACTCTAATTTGCCCCAGCTGTTGCAAGAGATTCAGGAGAAGCTCGTGAAAGGTGCGGTCGAATGCATGATTTGCTGTGACATGGTGCGGAGGTCTGCGCCAATTTGGTCTTGCTCCAGTTGCTTCTCCATCTTTCACCTTAATTGTATAAAGAAGTGGGCGCGTGCACCCACTTCTGTGGATGTGTCTGTGGACAAGAATCAGCGGTTTAATTGGCGGTGCCCTGGTTGTCAATCTGTGCAGCTCACATCGTCCAAGGAGATTCGGTATGTTTGCTTCTGTGGGAAGAGGCCTGACCCCCCTTCTGACTTGTATCTCTTGCCACATTCCTGTGGAGAACCATGTGCCAAACCCCTTGAAAGGGAGCTTGGGGGGGATAAGGAGGTTCTTTGTCCTCATGTTTGTGTCTTGCAATGCCATCCCGGTCCTTGCCCTCCTTGCAAAGCATTTGCACCTCCACGTTTGTGTCCTTGTGGGAAGAAAAATGTTACCACCCGTTGTTCTGACCGCCAGTCTGTTCTTACCTGTGGCCAGCGCTGTGAAAAGCTTCTTGAATGTGGGCGGCATCGGTGTGAACAAATCTGTCATCTGGGACCTTGTGATCCTTGTGAGATTCCTGTCAATGCCTCTTGCTTTTGCAGTAAAAGGACGGAGCTCATTCTTTGTGGGGAAATGGCTCTGAAAGGTGAAATCAAAACCGAAGGTGGAGTTTTCTCTTGCGGTTCAACCTGTGGAAAGAAACTTGGTTGCGGTAATCATATTTGTATCGAGACGTGTCATCCCGGCAGCTGTGGGGAGTGTGGATTGTTACCATCCCATATTAAGACATGCTGTTGTGGGAAAACTAGATTGAAGCAGGAACGACAGAGTTGTTTAGACCCTATACCTACCTGTTCACAAGTATGTGGGAAGACCCTTCCTTGCGGGATTCATCATTGTGAAGAGGCATGCCACGCTGGGGATTGTTCTCCTTGTTTGGTTCTAGTCTCTCAGAAGTGTCGATGTGGCTCTACTTCCCGAACTGTGGAGTGCTGTAAGACAAAAGTGGACGCTGTGAAATTTACTTGTGAAAAGCCTTGTGGGCAGAAAAGGAATTGTGGAAGGCATAGATGCAGTGAACGGTGTTGTCCACTTTCTAATCCAAATAATGTTCAAATTGCGGATTGGGATCCACACTTCTGTTCATTACCATGTGGAAAGAAGCTAAGGTGTGGGCAGCATGCATGTGAATCCCTATGCCACAGTGGTCATTGTCCACCTTGTCTTGAAACTATATTTACTGATTTGACATGTGCTTGTGGCAAGACTTCAATCCCTCCTCCATTGCCTTGTGGCACACCTCCTCCCTCGTGTCAGCTTCCATGTTCTGTTCCTCAGCCTTGTTCACATCCAGCGTCTCACAGCTGCCATTTTGGGGATTGCCCTCCTTGTTCAGTGCCTGTAGCAAAAGAATGTATTGGTGGGCATGTAATTCTTCGGAACATACCCTGTGGTTCAAAGGATATTAGATGCAATAAACTATGTGGGAAGACCAGACAGTGCGGTTTACATGCATGTGGTAGAACATGTCACCTCCCACCTTGTGATAATCCATCTACAGTGCCGGGTACCCGTGCCTCTTGTGGGCAAACATGTGGTGCTCCAAGAAGGGACTGCCGCCATACATGTACAGCTCCTTGTCACCCTTCAACTCCATGTCCAGACACGAGATGCGAATTCCCTGTCACAATTACATGTTCTTGTGGCCGAATGACAGCGAATGTTCCTTGTGATGCTGGTGGAAGCTCTGCTAATTATAATGCCGATGCTGTACACGAAGCTTCCATTATCCAAAAGTTGCCTGTGTTGCTTCAACCTGTTGCTGCAAATGGCAAGAAAATTCCTCTTGGACAAAGAAAACTGATGTGTAATGATGACTGTGCTAAGTTAGAACGTAAACGGGTACTTGCAGATGCCTTTGAGATAACCGCTCCAAATCTGGATTCTCTCCATTTTGGTGACAATCCTGGTACTTCTGAATTGCTTTCTGACATGTTGAGACGTGATCCTAAATGGGTTTTATCAGTTGAGGAGAGATGCAAGGTTTTGGTTCTTGGCAAGAACAGGGGAAATACACAAGGTCAAAAAATCCATATTTTCTCTCCTATGATAAAGGACAAAAGAGATGCAGTGAGGGTCATTGCTGAAAGATGGAAGCTTGCGGTGTATGTAGCTGGTCGTGAGCCAAAGCGTTTTGTAGTTGTTCATGTTACCCCAAAATCAAGAGCTCCTGCTCGTGTGCTAGGGGTTAAGGGAACTACAACTGTAAATGCACCCCTTCCTCCTGCATTCGATCCTTTAGTAGATATGGATCCTCGGCTTGTTGTCTCTTTTCTAGACTTACCAAGGGAGGCAGATATCAGTGCACTGGTGCTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATGACAAAAATGCACTGGCTGTTTTTAATGATCCAGCCCGAGCTGCAACTGCAATGAGGAGGTTGGATCATGGTACTGTTTATCAGGGAGCCGTGGTAGTGATTGTTCCGAATGTTGGGGCATCAGCAGCATCTTCAGCCACCAATGCTTGGGGAGGATCTGGGACAATGAAAGGAGGAGGATCACTGGCAGCATTGAAGGGGGGTAATCCGTGGAAAAAAGATGTTCAAGAGACAGGTTGGAAAGATTCTTGGGGTGATGAGGAGTGGGCTACTGGTTCTGCTAATGTGCATTTGCCTATTCAGAAGAAAGATTCCCTCATATCTACTTCAGTAAACCCTTGGAGTGTCTTAAATCAAGAATCTTCTTCAAGTTCATCTGCTGCAGCTGTTAAAGCTGATGTTTCCAAGGAACACTCAGACAGTAGTGCTGTCACAAACTTGGAGCCTCATGATGGCGGTTCAAATCTAGGACAGCATGCAGGAAACTTGGATACTTTAGAAGATTCTGAGGTAGTAGATGATTGGGAGAAGGCTTGTGAATAG 3303 0.4705 MNSISTCQLESYRLESRRMSSQERSQRSRVPRQEWIRRGSTDQSQNQNQNGAATAAATAAGSSNTTNRHRRSGPIPSPNPNPNPNPNPNPNPKNNVQKRFNSRDSNLPQLLQEIQEKLVKGAVECMICCDMVRRSAPIWSCSSCFSIFHLNCIKKWARAPTSVDVSVDKNQRFNWRCPGCQSVQLTSSKEIRYVCFCGKRPDPPSDLYLLPHSCGEPCAKPLERELGGDKEVLCPHVCVLQCHPGPCPPCKAFAPPRLCPCGKKNVTTRCSDRQSVLTCGQRCEKLLECGRHRCEQICHLGPCDPCEIPVNASCFCSKRTELILCGEMALKGEIKTEGGVFSCGSTCGKKLGCGNHICIETCHPGSCGECGLLPSHIKTCCCGKTRLKQERQSCLDPIPTCSQVCGKTLPCGIHHCEEACHAGDCSPCLVLVSQKCRCGSTSRTVECCKTKVDAVKFTCEKPCGQKRNCGRHRCSERCCPLSNPNNVQIADWDPHFCSLPCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGKTSIPPPLPCGTPPPSCQLPCSVPQPCSHPASHSCHFGDCPPCSVPVAKECIGGHVILRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHLPPCDNPSTVPGTRASCGQTCGAPRRDCRHTCTAPCHPSTPCPDTRCEFPVTITCSCGRMTANVPCDAGGSSANYNADAVHEASIIQKLPVLLQPVAANGKKIPLGQRKLMCNDDCAKLERKRVLADAFEITAPNLDSLHFGDNPGTSELLSDMLRRDPKWVLSVEERCKVLVLGKNRGNTQGQKIHIFSPMIKDKRDAVRVIAERWKLAVYVAGREPKRFVVVHVTPKSRAPARVLGVKGTTTVNAPLPPAFDPLVDMDPRLVVSFLDLPREADISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGTVYQGAVVVIVPNVGASAASSATNAWGGSGTMKGGGSLAALKGGNPWKKDVQETGWKDSWGDEEWATGSANVHLPIQKKDSLISTSVNPWSVLNQESSSSSSAAAVKADVSKEHSDSSAVTNLEPHDGGSNLGQHAGNLDTLEDSEVVDDWEKACE 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04230 1100 MobiDBLite consensus disorder prediction 1 15 - -
Vian1g04230 1100 CDD NF-X1-zinc-finger 497 540 - -
Vian1g04230 1100 CDD NF-X1-zinc-finger 644 693 - -
Vian1g04230 1100 Pfam NF-X1 type zinc finger 411 428 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 Pfam NF-X1 type zinc finger 617 632 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 Pfam NF-X1 type zinc finger 236 251 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 Pfam NF-X1 type zinc finger 648 673 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 Pfam NF-X1 type zinc finger 289 306 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 Pfam NF-X1 type zinc finger 353 370 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 Pfam NF-X1 type zinc finger 507 524 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 Pfam NF-X1 type zinc finger 469 480 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 MobiDBLite consensus disorder prediction 16 36 - -
Vian1g04230 1100 ProSiteProfiles Zinc finger PHD-type profile. 122 183 IPR019787 -
Vian1g04230 1100 SMART znfxneu3 469 499 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 SMART znfxneu3 507 526 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 SMART znfxneu3 353 372 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 SMART znfxneu3 617 646 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 SMART znfxneu3 289 308 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 SMART znfxneu3 655 676 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 SMART znfxneu3 564 582 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 SMART znfxneu3 411 430 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 SMART znfxneu3 234 252 IPR000967 GO:0005634|GO:0008270
Vian1g04230 1100 CDD NF-X1-zinc-finger 279 327 - -
Vian1g04230 1100 MobiDBLite consensus disorder prediction 1059 1082 - -
Vian1g04230 1100 CDD NF-X1-zinc-finger 343 386 - -
Vian1g04230 1100 CDD NF-X1-zinc-finger 554 602 - -
Vian1g04230 1100 ProSiteProfiles Zinc finger RING-type profile. 125 181 IPR001841 -
Vian1g04230 1100 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 23 1007 IPR034078 GO:0003700
Vian1g04230 1100 SUPERFAMILY RING/U-box 115 184 - -
Vian1g04230 1100 MobiDBLite consensus disorder prediction 75 91 - -
Vian1g04230 1100 MobiDBLite consensus disorder prediction 37 74 - -
Vian1g04230 1100 MobiDBLite consensus disorder prediction 1 100 - -
Vian1g04230 1100 CDD RING-CH-C4HC3_NFX1-like 124 181 - -
Vian1g04230 1100 MobiDBLite consensus disorder prediction 1048 1100 - -
Vian1g04230 1100 CDD NF-X1-zinc-finger 214 272 - -
Vian1g04230 1100 CDD NF-X1-zinc-finger 401 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04230 Vian-Chr1 65191136 65194438 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Vian1g04230 zf-NF-X1 1.7e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04230 K12236 - gmx:106799700 1892.09