Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04216 ATGGATGAATTACTCGGCCTTCTGAGAATTCACGTCAAGCGTGGCGTCAACCTCGCCATTCGCGATGTCAGCACCAGCGATCCATACGTCGTCGTTAAGATGGATAAACAGAGGCTCAAGACTCGTGTGATTAAAAAGGACATTAACCCTGAGTGGAACGAAGATCTTACTCTTTCTGTGACAGATCCCTCTGCTCCAGTGATACTGACCGTGTATGATCATGACACTTTCTCCATGGATGACAAAATGGGAGATGCGGAATTGGATATCTCACCGTATATAGAAGCCGTGAAGATGCAGGTGGAAGATCTTCCGAATGGAACTATAATCACGAGAATACATCCGTGTAGACAAAACTGCCTGGCGGAGGAAAGTTGCGTGGTTTTTGAGAATGGTAAAGTGCTGCAAGATGTTGTTCTAAGACTAAGACACGTGGAAAGCGGTGAGCTGGAACTTCAATTGGAATGGATTGATCTTCCTGGGGCCAAGGGATTGGGGATTCGGAGTGGTACTGTTCCCACTCCTTTGGTTGTGGGCATGGGTGCGGCGTGCGAGGTGGCTAAAAACGAGATGGATTATGATGAGAAGAGGATTTCTAGTTTGCAACAAAGACTCCTTAATGGGATTAGAGAGAAGCTTGATGGGGTGGTGGTGAATGGGAGCTTGGAGAGGCGCTATGTGGGGAATTTAAATCTGTCTTTTGCGTATGTTGAAGGGGAGAGTTTGCTCACGGGGTTGAAGGAGGTGGCTGTGTCCAGTGGCAGTGCCTGCACTAGTGCTAGCCTGGAGCCTTCGTACGTTTTGAGGGCGTTGGGAGTGGAGGAGGACATGGCTCACACTTCTATTAGGTTTGGAATTGGGAGGTTCACTACCGAAGCTGAAATTGACAGAGCAGTGAAGCTCACTGTTCAGCAGGTGGAGAAATTGAGGGAAATGAGTCCGCTGTATGAAATGGTCAAGGAAGGGATCAACATCAAGGATATTCAATGGGCACAGCACTGA 1002 0.481 MDELLGLLRIHVKRGVNLAIRDVSTSDPYVVVKMDKQRLKTRVIKKDINPEWNEDLTLSVTDPSAPVILTVYDHDTFSMDDKMGDAELDISPYIEAVKMQVEDLPNGTIITRIHPCRQNCLAEESCVVFENGKVLQDVVLRLRHVESGELELQLEWIDLPGAKGLGIRSGTVPTPLVVGMGAACEVAKNEMDYDEKRISSLQQRLLNGIREKLDGVVVNGSLERRYVGNLNLSFAYVEGESLLTGLKEVAVSSGSACTSASLEPSYVLRALGVEEDMAHTSIRFGIGRFTTEAEIDRAVKLTVQQVEKLREMSPLYEMVKEGINIKDIQWAQH 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04216 333 Pfam Aminotransferase class-V 167 297 IPR000192 -
Vian1g04216 333 SUPERFAMILY PLP-dependent transferases 164 320 IPR015424 -
Vian1g04216 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Vian1g04216 333 Gene3D Aspartate Aminotransferase, domain 1 163 333 IPR015422 GO:0003824
Vian1g04216 333 FunFam Cysteine desulfurase IscS 181 297 - -
Vian1g04216 333 CDD C2_ArfGAP 5 148 - -
Vian1g04216 333 Coils Coil 184 204 - -
Vian1g04216 333 Gene3D C2 domain 4 162 IPR035892 -
Vian1g04216 333 SMART C2_3c 7 102 IPR000008 -
Vian1g04216 333 Pfam C2 domain 6 92 IPR000008 -
Vian1g04216 333 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Vian1g04216 333 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04216 Vian-Chr1 65101900 65104274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04216 38 177 C2H2 Transcription Factor Family AT1G70790 56.338 3.11e-52 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04216 K04487 - gmx:100785725 321.242
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04216 1 65101900 65104274 Vian8g01405 8 33316225 33317860 PCT