Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04204 ATGGCTTCGAGATTCTGGACCCAGGGTGGAAGTGATTCCGAGGAGGAGGAGAGCGATTATGACGAGGAGGTCGAAACGGCGGTTGGTGATTCTGCCAATCAAGCAGTGACAAGCAGGTACCTGCAGGACAATGCAAGTGACAGTGATGATTCCGATGGCCAAAAACGTGTTGTCAGGTCGGCTAAAGACAAGCGTTTCGAGGAGATGGTTTCCACTGTCGACCAGATGAAGAATGCCATGAAGATCAACGACTGGGTGAGCTTGCTAGAGAATTTTGACAAGATTAACAAACAGCTTGAGAAAGTCATGCGCATCACTGAGTCGGTGAAGGTCCCCAACCTTTACATCAAGGCACTTGTGATGTTGGAAGATTTCTTGACTCAGGCTTTGGCTAATAAGGATGCCAAGAAGAAAATGAGTAGTAGCAATGCTAAAGCCTTGAACTCAATGAAGCAGAAGCTGAAGAAGAATAACAAGCAGTACGAGGAGTTGATTAATAAGTGCAGGGAGAACCCTGAGAGTGAGGAGGAGAAAGAGGAAGAGGAGAGTGAGGAAGATTATGAAAGTGATGATGAGATTATTGATCCAGAGCAGCTTCGAAAACCAGAAGCCAAATCGGATTCTGAAGCTTCTCAATATGACGATGAGAAGCCAGATGAAGGTCCTTGGGACCAAAAGCTTAGCAAGAAGGACAGACTTTTAGATAGACAGTTCATGAAAAACCCTAGTGAGATCACATGGGACGCTGTTAACAAGAAGTTTAAAGAGGTTGTGTCTGCTAGAGGAAGGAAGGGAACTGGGAGGTTTGAACAGGTTGAGCAGCTCACTTTCCTAACAAAAGTTGCTAAGACACCTGCACAGAAGCTGGAAATTCTGTTCAGTGTGGTTTCTGCTCAGTTTGATGTTAATCCAGGTCTGAATGGATACATGCCAATAAATGTATGGAAAAAATGTGTGCAGAACATGCTGATCATTCTTGATATTTTAGTCCAGTACCCAAACATAGTGGTCGATGATTCTGTGGAACCAGATGAGAATGAAACTCAGAAAGGTACTGACTATAATGGACCAATTCGGGTTTGGGGTAACTTAGTTGCTTTCTTAGAAAGAATTGATGTTGAGTTTTTCAAGAGCTTGCAATGCATAGATCCTCATACACGTGACTATGTGGAGAGACTTAGGGATGAACCCACGTTTCTGGTTCTTGCTCAGAATGTTCAGGAATATCTTGAAAGAGTTGGAAATTTCAAAGCCACGTCTAAGGTGGCCTTGAGGAGGGTTGAGCTCATTTACTACAAACCACAGGAGGTTTATGATGCCATGAGAAAATTGACTGAGTTGACCGAAGCTGGGGAGAACGGAGGGGATGCAAGTGAGGAGTCTAAAGAATTTGAACCAAGAGTTCCAACTGCATTTGTTGCTACCCCAGAGGTTGTGGCACGAAAACCCACCTTCCCTGAGTATAACAGGACCTTGATGGATGTATTGGTATCTTTGATATACAAATATGGAGATGAGCGAACTAAAGCACGTGCAATGCTCTGTGATATATATCAGCATGCACTTCTTGATGAGTTCTCAGTTGCCCGTGATCTCCTGCTTATGAGCCATTTGCAAGATAGTGTTCAGCATTTAGACATTTCAACGCAGATACTTTTTAACAGGGCTATGTCACAGTTAGGTTTATGCGCTTTTCGGGTTGGACTGATTTCTGAAGCACATGGCTGTCTGTCTGAACTCTACTCTGGTGGAAGGGTGAAGGAGTTGCTGGCACAAGGTGTGTCACAAAGTCGTTATCACGAGAAGACTCCAGAGCAGGAAAGGTTGGAAAGAAGACGGCAGATGCCATATCATATGCACATCAATCTTGAGCTACTGGAGGCCGTACATCTTGTATCTGCTATGCTGCTGGAAGTTCCCAACTTGGCAGCCAATGTTCATGATGCCAAACGGAAGGTCATTAGTAAAACTTTCCGACGCTTGCTTGAAGTAAGCGAGAAACAAACATTTACTGGTCCACCGGAAAATGTGAGAGACCATGTTATGGCTGCTACAAGGGTTCTTCGCAAGGGAGACTTCCAGAAGGCGTATGACATTATTGTGACTCTTGATGTATGGAAATTTGTGAAAAATCGAGACAGTGTGCTTGAAATGTTGAAGGACAAAATCAAGGAGGAGGCATTGAGGACATACCTCTTTACCTTCTCTTCGTCTTATGAATCCTTGTGCTTAGATCAGCTCACAAAATTTTTTGATCTCTCTGTTTCTCGTACTCACAGCATTGTCAGTAGGATGATGATCAATGAGGAGCTTTATGCAAGCTGGGACCAGCCAACCGAATGCATTCTTTTCCAAGATGTCGAACACTCTAGGCTGCAGGCATTGGCATTCCAGTTGACCGAGAAGTTATCTATTCTTGCGGAGAATAATGAAAAAGCAACAGAAGCAAGGATAGGTGGTAGTGGACTAGATCTGCCTCTAAGGCGGAGAGAAGGCCAGGACTACGCAGCCGCAGCCGGCAGTGGAACAACATCTTCAGGTGGTAGATGGCAAGACCTGTCCCTTTCTCAGCCAAGATCAGGCAGTGGGCGTACCGGGTATGGTGGTGGTGGTGGAAGACCAATGGCATTAGGCCAAGCAGCTGGGAGTGGCTATTCAAGGGGACGAGGAACAGGTGCTTCATATGGAGGTTCAGGGAGGACTGCTCAAAGGGGTTCAGGATTAAGGGGATCCCATGGCGATGTGTCTACTCGCATGGTTAGCCTCAAGGGAGCAGCTCGTGCTTGA 2787 0.4543 MASRFWTQGGSDSEEEESDYDEEVETAVGDSANQAVTSRYLQDNASDSDDSDGQKRVVRSAKDKRFEEMVSTVDQMKNAMKINDWVSLLENFDKINKQLEKVMRITESVKVPNLYIKALVMLEDFLTQALANKDAKKKMSSSNAKALNSMKQKLKKNNKQYEELINKCRENPESEEEKEEEESEEDYESDDEIIDPEQLRKPEAKSDSEASQYDDEKPDEGPWDQKLSKKDRLLDRQFMKNPSEITWDAVNKKFKEVVSARGRKGTGRFEQVEQLTFLTKVAKTPAQKLEILFSVVSAQFDVNPGLNGYMPINVWKKCVQNMLIILDILVQYPNIVVDDSVEPDENETQKGTDYNGPIRVWGNLVAFLERIDVEFFKSLQCIDPHTRDYVERLRDEPTFLVLAQNVQEYLERVGNFKATSKVALRRVELIYYKPQEVYDAMRKLTELTEAGENGGDASEESKEFEPRVPTAFVATPEVVARKPTFPEYNRTLMDVLVSLIYKYGDERTKARAMLCDIYQHALLDEFSVARDLLLMSHLQDSVQHLDISTQILFNRAMSQLGLCAFRVGLISEAHGCLSELYSGGRVKELLAQGVSQSRYHEKTPEQERLERRRQMPYHMHINLELLEAVHLVSAMLLEVPNLAANVHDAKRKVISKTFRRLLEVSEKQTFTGPPENVRDHVMAATRVLRKGDFQKAYDIIVTLDVWKFVKNRDSVLEMLKDKIKEEALRTYLFTFSSSYESLCLDQLTKFFDLSVSRTHSIVSRMMINEELYASWDQPTECILFQDVEHSRLQALAFQLTEKLSILAENNEKATEARIGGSGLDLPLRRREGQDYAAAAGSGTTSSGGRWQDLSLSQPRSGSGRTGYGGGGGRPMALGQAAGSGYSRGRGTGASYGGSGRTAQRGSGLRGSHGDVSTRMVSLKGAARA 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04204 928 Coils Coil 144 171 - -
Vian1g04204 928 Hamap Eukaryotic translation initiation factor 3 subunit C [EIF3C]. 2 866 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vian1g04204 928 MobiDBLite consensus disorder prediction 835 928 - -
Vian1g04204 928 MobiDBLite consensus disorder prediction 133 228 - -
Vian1g04204 928 MobiDBLite consensus disorder prediction 30 44 - -
Vian1g04204 928 MobiDBLite consensus disorder prediction 194 228 - -
Vian1g04204 928 MobiDBLite consensus disorder prediction 1 58 - -
Vian1g04204 928 MobiDBLite consensus disorder prediction 134 154 - -
Vian1g04204 928 MobiDBLite consensus disorder prediction 175 193 - -
Vian1g04204 928 SUPERFAMILY "Winged helix" DNA-binding domain 714 788 IPR036390 -
Vian1g04204 928 MobiDBLite consensus disorder prediction 155 174 - -
Vian1g04204 928 MobiDBLite consensus disorder prediction 12 26 - -
Vian1g04204 928 ProSiteProfiles PCI domain profile. 617 789 IPR000717 -
Vian1g04204 928 Pfam PCI domain 657 785 IPR000717 -
Vian1g04204 928 MobiDBLite consensus disorder prediction 838 863 - -
Vian1g04204 928 Pfam Eukaryotic translation initiation factor 3 subunit 8 N-terminus 43 649 IPR008905 GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vian1g04204 928 PANTHER EUKARYOTIC TRANSLATION INITATION FACTOR 3, SUBUNIT 8 EIF3S8 -RELATED 1 922 IPR027516 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vian1g04204 928 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 718 806 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04204 Vian-Chr1 65016982 65020502 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04204 1 928 Eukaryotic Initiation Factors Gene Family AT3G56150 67.991 0.0 1191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04204 K03252 - gmx:100779751 1564.67