Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04202 ATGCCTTCTCTAGTAGATCTGCAAGGAAAATCAACCTCAGTTGATGTCACATGGGAAGCAGTCTTGGTCAATAGGGCTGCTGATTCCAACTTGTTGAAACTTGAACAAGAAGCCATGAAGATGGCTGCCAGTTCAGGAAAAGATTTTGAAGTAGTTGTAAATAGCAATTTGGTACACAAGCTTGCAATAATGGTGGCTGACTATATGGGTGGATCAGTTAAAGATCCTGAAAGCATGTCTAGAGCCTGGAGGAGTCTTAGTTACAGTCTAAAAGCCACCCTTGGCAGCATGGTTTTGCCTCTTGGTTCACTGACCATTGGATTGGCTCGGCATCGTGCATTGTTATTCAAGGTTTTAGCAGACAGTTTGGGCATCCCGTGTCGATTGGTGAAAGGACTGCAGTATATGGGTTCTGATGATGTGGCAATGAACTTTGTCAAGATTGATGATGGAAGGGAGTACATTGTGGACCTAATGGCAGCTCCTGGAGCACTTATTCCATCTGATGCTACTGCATCACACATTGAATGCGATGGATCTTCCTTTGTGGCCAGTCCTTCATCAAGAGAGCTAGATTCGTCCAATGTAGCATCATTGAGTAGCGGGGTTGGAAGTTCATCTGAAGAAACTTCAGACTGTGGAGGGAAAGAATCTGGTTTGAGTGAGTTTGCTACAGGCAAGGAAGATTTAAAGAAACCATCAAATGAATCCAAAAGTACCCCCTATGCAGAGAAGATCAGAGTGAAGGATTCTTCCGGCAGAACTAACTATCCATACACGCATGGACGATCTCCTTCTTGGACTGAGGGCATCAGTTCCCCTGCAGCACGTAGAATGAAAGTCAAAGATGTTTCCCAATACATGATTGATGCTGCTAAGGAGAATCCTAACTTGGCTCAAAAACTTCATGACGTTTTACTTGAAAGTGGTGTTGTCGCACCTCCAAACTTATTTTCTGAAATGTATCATGGGCAGTTAGGTACTCCAACTGGGACCAATTTTCCTACCGAACAGAAAGATGAAAATAAACAACCAAGTGTGCAGCAAGAAATTAAGATTGATGACAACCTAGTTCCTGCTCGATTTTTGCCTCCTTTGCCTTACCACAAAATTCTTCGCAAAGCAGTTCCTGGCAGTCATCTAGATTCTAAGCCTGTAGATGGCTTAGGATTTGGTCTTCCCCTTGATACAGGGGAAACTGTTGGACAGAACATACCATCTCAGGCAGAAGCAGCTCGGGCAAAGTACGGGAAAAATGACAGTCGAAGTGATGGGGATACAGAGGGTGGTGGTTCTGAGTCAAAGGGTAGTGGTGATGGAGAGCCTAATCCTTTAGGAGAAAACTCGGAAGGTGAGAGAAAATCTGACAGATCAGTAAGTAATGACAGCAACAAATCTGATTCTGCACTGGATGAGGTTGCCGAGTATGACATTCCATGGGAGGAAATCAAAATGGGAGAGCGTATTGGACTAGGATCATATGGGGAAGTTTACCGTGGTGAATGGCATGGAACTGTCCAAATAATGAAAAGACTGAGGCATCCAAATGTTGTTCTCTTCATGGGAGCAGTAACTCGGCCTCCAAATCTTTCAATTGTTTCTGAATTTCTTCCTAGAGGGAGTTTGTATAGATTAATTCACCGACCTAACAATCAATTAGATGAGCGAAGGCGGTTGCGGATGGCTCTTGATGCTGCCCGAGGAATGAACTATCTGCACAGCAGTACTCCAGTGATAGTGCATCGTGATTTGAAGTCCCCAAATCTTCTTGTTGACAAAAACTGGGTTGTAAAGGTATGTGATTTTGGCTTATCACGAATGAAGCATAGCACCTTCCTTTCTTCCAGATCAACTGCGGGAACAGCTGAATGGATGGCTCCAGAAGTGTTGAGAAATGAACTTTCAGATGAAAAGAAAAACATATTTGAGGTTGGAGCAATGAATCACGATAGGCATCAGGCTGATGATGAGAAACAGAATCATCAGTTGATCTTGGATGCTGCAGCTAGGTCGAATTCTCCAATGTGGTGCGACGTTTTCAGCTATGGCGTCATATTGTGGGAGCTCTCTACGTTGCAGCAACCCTGGGGAGGAATGAATCCAATGCAAGTTGTTGGTGCAGTGGGTTTCCAACATCGCCGTCTAGACATTCCAGATGATGTAGACCCTGCCATTGCAGATATTATCAGACAATGCTGGCAGACAATTGTGGCATATCACTCTGAGAAGCTGTTCTTCTCATTCTGTTTAGACTGTTTGACGTTCTCCAACTGGCATAAACATGTTTCTAAGGTTGTAGATACGAGAGATCCAAAGCTGAGGCCAACATTTGCTGAAATCATGGCTGCTCTGAAGCCATTGCAGAGGCCAATTACTGCTTCTCAAGTGCCTAGATCAAGTGCTCAGTCATCACGAGTTACTGAATTTCCCGCAGGATAG 2439 0.442 MPSLVDLQGKSTSVDVTWEAVLVNRAADSNLLKLEQEAMKMAASSGKDFEVVVNSNLVHKLAIMVADYMGGSVKDPESMSRAWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLADSLGIPCRLVKGLQYMGSDDVAMNFVKIDDGREYIVDLMAAPGALIPSDATASHIECDGSSFVASPSSRELDSSNVASLSSGVGSSSEETSDCGGKESGLSEFATGKEDLKKPSNESKSTPYAEKIRVKDSSGRTNYPYTHGRSPSWTEGISSPAARRMKVKDVSQYMIDAAKENPNLAQKLHDVLLESGVVAPPNLFSEMYHGQLGTPTGTNFPTEQKDENKQPSVQQEIKIDDNLVPARFLPPLPYHKILRKAVPGSHLDSKPVDGLGFGLPLDTGETVGQNIPSQAEAARAKYGKNDSRSDGDTEGGGSESKGSGDGEPNPLGENSEGERKSDRSVSNDSNKSDSALDEVAEYDIPWEEIKMGERIGLGSYGEVYRGEWHGTVQIMKRLRHPNVVLFMGAVTRPPNLSIVSEFLPRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHSSTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEVLRNELSDEKKNIFEVGAMNHDRHQADDEKQNHQLILDAAARSNSPMWCDVFSYGVILWELSTLQQPWGGMNPMQVVGAVGFQHRRLDIPDDVDPAIADIIRQCWQTIVAYHSEKLFFSFCLDCLTFSNWHKHVSKVVDTRDPKLRPTFAEIMAALKPLQRPITASQVPRSSAQSSRVTEFPAG 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04202 812 Gene3D Phosphorylase Kinase; domain 1 463 506 - -
Vian1g04202 812 MobiDBLite consensus disorder prediction 409 470 - -
Vian1g04202 812 ProSiteProfiles Protein kinase domain profile. 439 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g04202 812 Pfam Protein tyrosine and serine/threonine kinase 677 735 IPR001245 GO:0004672|GO:0006468
Vian1g04202 812 Pfam Protein tyrosine and serine/threonine kinase 506 643 IPR001245 GO:0004672|GO:0006468
Vian1g04202 812 Pfam Ethylene-responsive protein kinase Le-CTR1 1 166 - -
Vian1g04202 812 MobiDBLite consensus disorder prediction 253 271 - -
Vian1g04202 812 MobiDBLite consensus disorder prediction 415 429 - -
Vian1g04202 812 MobiDBLite consensus disorder prediction 446 461 - -
Vian1g04202 812 SUPERFAMILY Protein kinase-like (PK-like) 473 735 IPR011009 -
Vian1g04202 812 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 111 793 - -
Vian1g04202 812 CDD STKc_MAP3K-like 489 784 - -
Vian1g04202 812 SMART serkin_6 483 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g04202 812 MobiDBLite consensus disorder prediction 193 274 - -
Vian1g04202 812 Gene3D Transferase(Phosphotransferase) domain 1 542 795 - -
Vian1g04202 812 Gene3D Phosphorylase Kinase; domain 1 507 541 - -
Vian1g04202 812 MobiDBLite consensus disorder prediction 193 214 - -
Vian1g04202 812 MobiDBLite consensus disorder prediction 792 812 - -
Vian1g04202 812 MobiDBLite consensus disorder prediction 791 812 - -
Vian1g04202 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 579 591 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04202 Vian-Chr1 65006337 65012606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04202 1 735 MAP Kinase Kinase Kinase AT1G18160 55.447 0.0 768
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Vian1g04202 EDR1 2.1e-59 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04202 - - gmx:100778331 1139.02