Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04190 ATGGATATTGAGGAGGATATCCGTTCTTTACAGCTTGAATCAGCAGAAGACAATAACGGGATGGTAAATCCAGAGGATGGAAGGCCGGAAGAGGTTGAGAAATCTGATAAGATGGATGAAGATCCTAAGCAAGAGGTTGAAGCACAGGATGTTGAGCCTGAGCCAAAAGTGAAAGATAAGGAGATTCATCCTGTTCAAGAAGAAGAAGAGGAGCCAGAGACAACTAAAAGGCACTTGAATGTGGTGTTTATTGGCCATGTGGATGCTGGTAAGTCTACAACTGGAGGCCAGATACTTTTCCTCAGTGGTCAAGTTGATGAACGAACTATTCAAAAATACGAGAAAGAGGCCAAGGACAAAAGTCGAGAAAGTTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTAAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAAACTGAGACAACAAGGTTTACTATTTTGGACGCACCTGTTATATCTGCCCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAGACTCGTGAGCATGTCCAGCTTGCTAAAACGCTGGGTGTGGCTAAGCTGCTTGTTGTTGTTAATAAAATGGACGAACCTACAGTGCAGTGGTCAAAAGAAAGGTTTTATTCACTTTTTTGCTGTATTCACACGCATCCTTTCTGTGTTTATGTAATTGTAATGAGAGTCCTTGCTGCTGGTATACCACTAGATGTCTTGTTTTTGCCAATATCTGGTCTAGCGGGTACAAACATGAAAACAAGGGTGGACAAAAGTGTTTGCCCATGGTGGAATGGGCCTTGCTTGTTTGAGGCCCTTGATGCTATCGAAGTTCCACCGAGAGATCCCAAAGGTCCTTTCAGGATGCCCATTATTGACAAATTTAAGGACATGGGAACTGTTGTTATGGGCAAAGTTGAATCTGGTTCTGTTCGTGAGGGAGATTCTTTGTTGGTCATGCCAAATAAGGATCAAGTGAAAGTTGTTGCCATATTCATTGATGAGGACCGTGTTAAACGTGCTGGACCTGGTGAAAATTTACGGATTAGATTATCTGGTGTTGAAGAAGAAGACATAGTAACCGGATTTGTCCTGTCTAGTGTTGCTAATCCAATACCAGCAGTTACTGAGTTTGTTGCTCAGTTGGTGATCCTTGAATTGCTAGACAATGCTATTTTTACTGCTGGGTACAAGGCTGTTCTGCATATCCACTCTGTGGTTGAGGAGTGTGAGATTGTTGAACTTTTACAGCAAATTGATACAAAGACAAGGAAGCCTTTGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCTGTTGTTGTGTGCCGTGTTCAGGTTAATAACTCTATTTGCATTGAGAAGTTCTCTGATTTCCCACAACTTGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCCGTGGGAAAAGTGACTGGTCTTGGAAGGAAACACTGCAACATTGTTCGATTTCCCAGAGAAAGAACAAGGACCAGAGCAACCATTGATGATGTTGAAACAGACCAACTTTCCTCAACACCCATTGTTGAGAATGAGAAAGCCAAAAAGAAAAAATTAAAAGGTGGTCGGTATTTTCCTCTCACAGCAGTTCAGAGGTTTGATGCCACTGCAAAGAGGATCGAAAATGGAGTATATCTTGGACCCATCGGACAGTTAACATTTGAAGGCAGACTTTCATGGAAAAAGAGAATACTGGCTTTTGTTTTTGAGAACATACGAGTAAAACTTGGACCCTTTCAACCTCTACAGATCAGTCTAGGAAAAAAGGAAGATAGGGAACCGGACAATAAGGATCCTTTCTTCATCTGGTTTTATGTTGATGAGGAAATTGCGGTTGCTCGAGGCCGGAGTGGAGGAACTGCATTCTGGTGCCGGTGTCGGCGGGTCAATAACTGA 1941 0.4256 MDIEEDIRSLQLESAEDNNGMVNPEDGRPEEVEKSDKMDEDPKQEVEAQDVEPEPKVKDKEIHPVQEEEEEPETTKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPVISARKGEFETGYERGGQTREHVQLAKTLGVAKLLVVVNKMDEPTVQWSKERFYSLFCCIHTHPFCVYVIVMRVLAAGIPLDVLFLPISGLAGTNMKTRVDKSVCPWWNGPCLFEALDAIEVPPRDPKGPFRMPIIDKFKDMGTVVMGKVESGSVREGDSLLVMPNKDQVKVVAIFIDEDRVKRAGPGENLRIRLSGVEEEDIVTGFVLSSVANPIPAVTEFVAQLVILELLDNAIFTAGYKAVLHIHSVVEECEIVELLQQIDTKTRKPLKKKVLFVKNGAVVVCRVQVNNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGLGRKHCNIVRFPRERTRTRATIDDVETDQLSSTPIVENEKAKKKKLKGGRYFPLTAVQRFDATAKRIENGVYLGPIGQLTFEGRLSWKKRILAFVFENIRVKLGPFQPLQISLGKKEDREPDNKDPFFIWFYVDEEIAVARGRSGGTAFWCRCRRVNN 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04190 646 Gene3D - 64 164 IPR027417 -
Vian1g04190 646 Pfam Elongation factor Tu domain 2 307 373 IPR004161 GO:0005525
Vian1g04190 646 PANTHER TRANSLATION FACTOR 165 489 - -
Vian1g04190 646 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 383 488 IPR009001 -
Vian1g04190 646 MobiDBLite consensus disorder prediction 1 76 - -
Vian1g04190 646 CDD eRF3_C_III 381 489 - -
Vian1g04190 646 PRINTS GTP-binding elongation factor signature 80 93 IPR000795 GO:0003924|GO:0005525
Vian1g04190 646 PRINTS GTP-binding elongation factor signature 198 207 IPR000795 GO:0003924|GO:0005525
Vian1g04190 646 Pfam Elongation factor Tu C-terminal domain 380 488 IPR004160 -
Vian1g04190 646 FunFam Putative translation elongation/initiation factor family protein 381 490 - -
Vian1g04190 646 Gene3D Translation factors 292 377 - -
Vian1g04190 646 SUPERFAMILY Translation proteins 286 379 IPR009000 -
Vian1g04190 646 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 132 147 IPR031157 -
Vian1g04190 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 67 298 IPR027417 -
Vian1g04190 646 MobiDBLite consensus disorder prediction 23 76 - -
Vian1g04190 646 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 291 377 - -
Vian1g04190 646 CDD eRF3_II 294 375 - -
Vian1g04190 646 Pfam Elongation factor Tu GTP binding domain 76 164 IPR000795 GO:0003924|GO:0005525
Vian1g04190 646 Gene3D Translation factors 379 489 - -
Vian1g04190 646 Gene3D - 165 287 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04190 Vian-Chr1 64892257 64910858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04190 76 492 Eukaryotic Initiation Factors Gene Family AT5G60390 32.200 2.31e-71 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04190 K03267 - gmx:100793653 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04190 1 64892257 64910858 Vian1g04190 1 64892257 64910858 ECH