Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04175 ATGCCTGTTGTCACAAACAGAACAACACCTACAGTGGCAGAGCACATCAAATGGAGAAGACCCAGAAACCAATTCAACCATCAACACCACCACCCCATTCCAGAATCAGATCCAAACCCTCAAATCCCTTCCATAATCCAATCAACTAGGAGCAAGTCCACCATATCCTCCCTGCTCCTCTCCACTTTCTCCAACAATACTCCCTCCTCCAATAATGACAGCCCCACCATCAATGCCACTGCCCAAAGCAAGAAAAAAACCAACTTTTCCGCAGCAACGTTCAGAGGGCTGGGGTGCACCGCCGGCGCGTCACAGCAGGTGTCGGTGCCAGCGGTGATTCGCTCCTCCGCCGATTGGCAAGGGAAGAAAACAAGAAAGAAGAAGCACAAGAGGACCACCAACGGCGGCAAGAACAAGACTTTCCATGGCGGGATTCTGGAGGGTTCCAATCCTGGGTGTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGCATTGGGTTCTCAGCAGATGCTGCTGCCTCTGTTGATTGTGTTGTGGCTCGGAAGAATGTATCTTCCAGAGGGAAAATTGATGTGGATAAGATTACTCACAGGGAGCGATCATCGTATGTGGGAAGGCGCACAGAAACCTTCACTTTTCTGGACACTGATTCTGACATTTTCACGCCACGCTCTGCCTCTGACTCTTATGGAACTGCAACATACTATCGTCATGTTAGAGATCCTTCATCTGATGGTTTTGCTGAGATAATGATGCTTCAAGGGAGTCTACTAATGGGTGGACAACTAAATTCACACGATCAATATAGAGACTGGAGACTTGATGTTGATAACATGTCCTATGAGCAATTGCTTGAGCTTGGTGAGAGAATTGGTCATGTGAACACTGGACTTAAGGAAGATGAGATGGGACGGAACATAAGGAAAGCCAGGCTTCAATTTTGGGATGATACATCAAAGCATCAAATAGATAAAGAGTGCAGCATTTGTCAGGAGGAGTATGAAGCAGGTGATGAGCTGGGGAGGCTAAATTGTGAACACAGTTATCACTTTCAGTGTATAAAACAATGGGTTTCACAGAAAAACTTCTGCCCAGTATGTAAGCAGCAAGTTGCAGCACGACATTGA 1128 0.469 MPVVTNRTTPTVAEHIKWRRPRNQFNHQHHHPIPESDPNPQIPSIIQSTRSKSTISSLLLSTFSNNTPSSNNDSPTINATAQSKKKTNFSAATFRGLGCTAGASQQVSVPAVIRSSADWQGKKTRKKKHKRTTNGGKNKTFHGGILEGSNPGCVDFQDVWCGPGIGFSADAAASVDCVVARKNVSSRGKIDVDKITHRERSSYVGRRTETFTFLDTDSDIFTPRSASDSYGTATYYRHVRDPSSDGFAEIMMLQGSLLMGGQLNSHDQYRDWRLDVDNMSYEQLLELGERIGHVNTGLKEDEMGRNIRKARLQFWDDTSKHQIDKECSICQEEYEAGDELGRLNCEHSYHFQCIKQWVSQKNFCPVCKQQVAARH 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04175 375 MobiDBLite consensus disorder prediction 117 144 - -
Vian1g04175 375 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 20 371 IPR045191 GO:0061630
Vian1g04175 375 SMART ring_2 327 367 IPR001841 -
Vian1g04175 375 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
Vian1g04175 375 MobiDBLite consensus disorder prediction 121 136 - -
Vian1g04175 375 FunFam E3 ubiquitin-protein ligase rnf12-A 294 373 - -
Vian1g04175 375 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 293 373 IPR013083 -
Vian1g04175 375 SUPERFAMILY RING/U-box 326 372 - -
Vian1g04175 375 MobiDBLite consensus disorder prediction 64 84 - -
Vian1g04175 375 Pfam Ring finger domain 325 368 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04175 Vian-Chr1 64778476 64781645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04175 12 282 C3H Transcription Factor Family AT1G73760 41.781 1.01e-55 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04175 - - vum:124831997 698.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian8g01440 8 33764381 33768915 Vian1g04175 1 64778476 64781645 ECH
Vian1g04175 1 64778476 64781645 Vian1g04175 1 64778476 64781645 ECH