Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04172 ATGGTGATAGGTCTTGGGTTGAAGATGAAGAGTGAGCAAGCAGGGAGCAATGGAAAGAACACTTTCATTCAGGCACATAGGGCATGGCTTCCCAAGCTTTTGATGCTGTGGATCCTTCTCATGGCTCTAATTGGTTGGTGCATCTATACTAAAATGGATGCTGACACTAAAGTCAGAAGAAAAGAGGTGCTCGGTAGCCTCTGTGATCAAAGGGCAAGAATGCTGCAAGATCAATTCAGTGTTAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGAACACCTTCTGCAATTGACCAGGAAACCTTTGCAGAGTATACAGCCAGGACAGCATTTGAAAGGCCATTGCTCAGTGGAGTGGCCTATGCACAAAGAGTGGTTAACTCCGAGAGAGAATCATTTGAGAAGCAACATGGATGGGTTATAAAGACAATGGAAAGAAAGCCTTCTCAGGTTAGAGATGAGTATGCACCGGTGATATTTGCACAAGAAACTCTTTCTTACCTCGAATCTCTTGATATGATGTCCGGGGAGGAGGACCGAGAGAATATTTTGAGGGCTAGGGCCACTGGGAAAGCTGTTCTCACTAGCCCTTTTAAGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTGACATTTCCTGTTTATAAATCTAAGCTCCCTACAAAGCCAACAATGGAAGAGCGTATTAAAGCAACAGCAGGATATGTTGGAGGATCCTTTGATGTTGAGTCCCTCGTGGAGAATTTACTTGGTCAACTTGCTGGTAACCAAGCAATTTTGGTGAACGTATATGACATCACAAACTTTACTGATCCCTTAATCATGTATGGGAAGCAAGATGAAGAAGGTGACATGTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATAAAATGATATGTAGGTATCACCAGAAGGCACCAACAAACTGGATAGCACTTACCACGGCATTCTTATTTTTTGTGATTCTTTTATTAGTGGGTTATATTTTGTATAGTGCTGGAAATCGTATTGTCAAAGTAGAGGATGATTTTCATAAAATGGCAGAATTAAAAGTCCGTGCAGAATCAGCTGATATTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATCAGAACACCCATGAATGGCATTTTAGGGATGCTCGGTCTGCTTCTAGGCACAGAATTGAGTTCCACTCAACTAGATTATGCTCAGACTGCTCAAGCATGTGGGATGGCTCTGATAGCATTGATAAATGAGGTGCTTGACCGTGCCAAAATTGAAGCTGGCAAGTTAGAGCTGGAAACAGTTCCATTTGACATTCGATCCATACTTGATGATGTGCTTTCTCTTTTCTCCGAGAAGTCTCGGCACAAAGGTTTAGAGCTGGCAGTATTTGTTTCTGATAAAGTTCCAGATATTGTCATGGGAGATCCTGGAAGATTCAGACAAATAGTAACAAACCTTGTTGGCAATTCAGTTAAATTCACTGAGCGAGGACATATATTGGTGAAAGTCCATCTAGCTGAAAATAGGATGTCCACAATGAATGGAAAAATGGAGACGTTTCTCAATGGACGATCAGATGAAGTTGTGCATGTGTCTAGCGGTGGTTATAATTTCAAAACTTTAAGCGGACATGAAGCAGCTGATGAACGGAACAGCTGGGACAATTTTAAGCATCTGATTGCCGACGAAGAATTTTTCTTTGATGATTCAGTTAAAAAGGTGGCAAGTGAATCCTATGAGCAAGTCACCTTGATGGTGAGTGTGGAGGACACTGGGAATGGAATTCCTTTCATAGCTCAAGATAAGATTTTCATGCCATTTGTACAGGCAGACAGCTCAACCTCAAGACATTATGGTGGTACTGGGATTGGCTTGAGTATAAGCAAGTGCCTGGTTGAACTGATGGGTGGTGAGATCAGTTTTATAAGCCGACCCCAGGTTGGGAGCACGTTTTCATTTACTGCAGATTTTGGAACAATTAAGAAAAATTCAATAACTGACATGAAGAAACATAACTTGGAAGATCTGCGTTCCAGTTTTAGAGGGTTTAAAGCCATTGTGGTTGATGGAAAACCTGTTAGAGCAGCTGTTACTAGATACCATCTGAAGAGACTAGGGATTCAGGCCAAAGTTGCAAATAGCATCAATAAGGCTGTTTCTTTATGTGGGAAAAATTGGTCTTTGACCTCAGGAATATTTCAGCCTGATATGATTTTTGTTGAGAAAGACTCGTGGATTTGTGGAGAGGATGGGATCTTCAACGTGTGGCAGCTGGACTGGAAACAGAACGGGCACATGTTTAAGATACCTCAAATGATCCTTCTTGCAACCAACATTACTAATGCTGAATTTGATAAAGCTAAAGCAGCAGGTTTCAGTGATACTGTGATCATGAAGCCTCTGAGAGCCAGCATGGTGGCTGCATGTCTTCAACAAGTTCTGGGAACGGGGAAGAAGAGACAGCTAGGAAAGGACACGGGTTCATCTTTTGCACGAAGCCTTCTTTGTGGGAAAAAAATACTTGTGGTTGATGACAATAGGGTAAATAGAAGGGTCGCAGCAGGTGCATTACAAAATTTTGGAGCTCATGCAACTTGTGCAGAAAGTGGCAAAATTGCTCTTGAAATGCTTCAATTGCCTCACAATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTCAAGCAACTGGGAAAATTCGGGAAATGGAGAGAAAGGCAAATGAGCTTCTGATGAATGGTGAATGTGGTGAAGGAAATGGCTGGAAAAAGGAGTACCATTTACCTATATTGGCCATGACAGCAGATGTAATTCAAGCAACGTACGAGAAGTGTGTGGAATGTGGAATGGATGGTTACGTTACAAAGCCTTTTGAGGAGGAAAATCTGTATCAAGCAGTTGCAAAGTTTTTCAACCCCAAGCCTACCTCAGACAACTCATTACAGAATGGCAACAGAACTGGGAAAGCACCTTAA 3024 0.4203 MVIGLGLKMKSEQAGSNGKNTFIQAHRAWLPKLLMLWILLMALIGWCIYTKMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRTPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERESFEKQHGWVIKTMERKPSQVRDEYAPVIFAQETLSYLESLDMMSGEEDRENILRARATGKAVLTSPFKLLGSHHLGVVLTFPVYKSKLPTKPTMEERIKATAGYVGGSFDVESLVENLLGQLAGNQAILVNVYDITNFTDPLIMYGKQDEEGDMSLVHESKLDFGDPYRKHKMICRYHQKAPTNWIALTTAFLFFVILLLVGYILYSAGNRIVKVEDDFHKMAELKVRAESADIAKSQFLATVSHEIRTPMNGILGMLGLLLGTELSSTQLDYAQTAQACGMALIALINEVLDRAKIEAGKLELETVPFDIRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHILVKVHLAENRMSTMNGKMETFLNGRSDEVVHVSSGGYNFKTLSGHEAADERNSWDNFKHLIADEEFFFDDSVKKVASESYEQVTLMVSVEDTGNGIPFIAQDKIFMPFVQADSSTSRHYGGTGIGLSISKCLVELMGGEISFISRPQVGSTFSFTADFGTIKKNSITDMKKHNLEDLRSSFRGFKAIVVDGKPVRAAVTRYHLKRLGIQAKVANSINKAVSLCGKNWSLTSGIFQPDMIFVEKDSWICGEDGIFNVWQLDWKQNGHMFKIPQMILLATNITNAEFDKAKAAGFSDTVIMKPLRASMVAACLQQVLGTGKKRQLGKDTGSSFARSLLCGKKILVVDDNRVNRRVAAGALQNFGAHATCAESGKIALEMLQLPHNFDACFMDIQMPEMDGFQATGKIREMERKANELLMNGECGEGNGWKKEYHLPILAMTADVIQATYEKCVECGMDGYVTKPFEEENLYQAVAKFFNPKPTSDNSLQNGNRTGKAP 1007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04172 1007 Pfam CHASE domain 104 284 IPR006189 -
Vian1g04172 1007 CDD HATPase_EvgS-ArcB-TorS-like 491 669 - -
Vian1g04172 1007 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 362 440 IPR036097 GO:0000155|GO:0007165
Vian1g04172 1007 SMART REC_2 850 983 IPR001789 GO:0000160
Vian1g04172 1007 SUPERFAMILY CheY-like 692 827 IPR011006 -
Vian1g04172 1007 Gene3D - 438 674 IPR036890 -
Vian1g04172 1007 FunFam Histidine kinase 4 105 320 - -
Vian1g04172 1007 Gene3D - 346 437 - -
Vian1g04172 1007 PANTHER TWO-COMPONENT HISTIDINE KINASE 21 984 - -
Vian1g04172 1007 ProSiteProfiles Histidine kinase domain profile. 381 671 IPR005467 -
Vian1g04172 1007 ProSiteProfiles CHASE domain profile. 101 313 IPR006189 -
Vian1g04172 1007 ProSiteProfiles Response regulatory domain profile. 851 987 IPR001789 GO:0000160
Vian1g04172 1007 CDD REC_hyHK_CKI1_RcsC-like 852 983 - -
Vian1g04172 1007 CDD HisKA 374 435 IPR003661 GO:0000155|GO:0007165
Vian1g04172 1007 Coils Coil 424 444 - -
Vian1g04172 1007 Gene3D - 689 830 - -
Vian1g04172 1007 Gene3D - 845 993 - -
Vian1g04172 1007 SMART HKATPase_4 486 671 IPR003594 -
Vian1g04172 1007 Pfam His Kinase A (phospho-acceptor) domain 374 439 IPR003661 GO:0000155|GO:0007165
Vian1g04172 1007 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 669 IPR003594 -
Vian1g04172 1007 FunFam Histidine kinase 4 346 437 - -
Vian1g04172 1007 SMART HisKA_10 374 439 IPR003661 GO:0000155|GO:0007165
Vian1g04172 1007 SUPERFAMILY CheY-like 849 988 IPR011006 -
Vian1g04172 1007 Gene3D CHASE domain 105 320 IPR042240 -
Vian1g04172 1007 ProSiteProfiles Response regulatory domain profile. 696 826 IPR001789 GO:0000160
Vian1g04172 1007 Gene3D - 52 104 - -
Vian1g04172 1007 PRINTS Bacterial sensor protein C-terminal signature 596 610 IPR004358 GO:0016310|GO:0016772
Vian1g04172 1007 PRINTS Bacterial sensor protein C-terminal signature 655 668 IPR004358 GO:0016310|GO:0016772
Vian1g04172 1007 PRINTS Bacterial sensor protein C-terminal signature 614 624 IPR004358 GO:0016310|GO:0016772
Vian1g04172 1007 PRINTS Bacterial sensor protein C-terminal signature 631 649 IPR004358 GO:0016310|GO:0016772
Vian1g04172 1007 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 428 666 IPR036890 -
Vian1g04172 1007 Pfam Response regulator receiver domain 852 922 IPR001789 GO:0000160
Vian1g04172 1007 SMART CHASE_2 101 286 IPR006189 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04172 Vian-Chr1 64744111 64749897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04172 15 996 Histidine Kinase Gene Family AT2G01830 69.556 0.0 1364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian1g04172 HATPase_c 1.5e-29 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04172 K14489 - gmx:100818481 1735.7