Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04166 ATGGCGCAGACACCACCAGCATTAGAGCAGGTCCAGTGCTTCGGCCGTAAGAAGACGGCGGTGGCAGTCACCTACTGCAAGCGCGGCCGCGGTCTTATCAAGATCAATGGATGTCCTATTGAGCTTGTGGAGCCGGAGATCCTCCGCTTCAAGGCTTTCGAGCCCATCCTCCTCCTCGGCCGCCACCGTTTCGCCGGCGTTGACATGCGCATCCGTGTCAAGGGTGGTGGACATACCTCCCAGATCTACGCCATCCGTCAGAGCATCGCCAAGGCTCTCGTCGCCTATTACCAGAAGTACGTCGATGAGCAGTCCAAGAAGGAGATCAAAGACATCCTCGTCAGGTACGACCGCACACTCCTCGTTGCCGATCCTCGCCGCTGCGAGCCCAAGAAGTTCGGTGGTCGCGGTGCTCGCGCCAGGTTCCAGAAATCCTACCGTTGA 444 0.5901 MAQTPPALEQVQCFGRKKTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04166 147 PANTHER RIBOSOMAL PROTEIN S9 9 144 IPR000754 GO:0003735|GO:0005840|GO:0006412
Vian1g04166 147 SUPERFAMILY Ribosomal protein S5 domain 2-like 10 147 IPR020568 -
Vian1g04166 147 ProSitePatterns Ribosomal protein S9 signature. 75 93 IPR020574 GO:0003735|GO:0005840|GO:0006412
Vian1g04166 147 FunFam 40S ribosomal protein S16 4 147 - -
Vian1g04166 147 Pfam Ribosomal protein S9/S16 15 147 IPR000754 GO:0003735|GO:0005840|GO:0006412
Vian1g04166 147 Gene3D - 4 147 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04166 Vian-Chr1 64702307 64702750 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04166 4 147 Cytoplasmic Ribosomal Protein Gene Family AT2G09990 89.583 3.23e-95 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04166 K02960 - gmx:100527911 286.189