Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04156 ATGGCAGAGAGTTCTTCATCATTCGCTGGGTCCGCTTCTCCCACCAGGTACGATGTGTTTCTGAACTTCAGAGGGGAAGACACTCGTGAGAACTTCATTAGTCACCTTTATGCAGCGCTGGAGAGGAAGCACATTGAAACATATATTGATTACAGACTACAAAGGGGCGAAGAAATTTCACCTGCACTGCAAACTGCAATAGAAGAATCAAAGATCTATGTCCTGGTTTTCTCCGAAAACTATGCATCTTCGACGTGGTGCCTGAATGAGCTCACTAAGATACTGGACTGCAAGAAGAGATATGGAAGGGATGTGATACCCATTTTCTACAAGGTGAATCCATCAACTGTCAGGAAGCACGAAGAGAGATACAAAGATGCATTCGAAGAGCATGAACTGCGGTTTAAGGAAAACATGGACAAAGTGCAAGAATGGAAAGATGCTCTAACCGAAGCTGCTGGCTTCTCAGGATGGGATTCAAACGTTATCAGGTCAGAAAACTCACTTGTTGAAAAAATTGTGGAAGACATTTTGGAAAAATTGGATCTTTATTCCATTAGTTCTGATCGAGGAATCATCGGCGTTGAAAAACAAATTGAAAGCATTCGGTTATTGATGCATTTTGAGTCATCAGATATCCGGATCATAGGAATTTGTGGCATGGGAGGAATAGGAAAAACTACAATTTCTCAACAAATATATCACACATTTGCAAAGCAATTTGATTCCAGAAGCCTTGTTTTAGACACTAAAAAAAAAATAGAAAGAGATGGAATAGACACTGTTAGAGAAAAATATATGTCTGAGCTTCTAAATGAAGTACCATCCCCTAGTTTATTATACTACAGTGAAAGACTCAAACGAATAAGGATTCTCATCATTCTTGATGATGTTACCGATTCACTACAACTTAAACAATTGCTAGGAAGGCATGATAGTTTTGGACAAGGCAGTAGAATCATTATAACCAGCAGAGACAGACAAGTGTTAAAGAATGCTGGAGCATATGACATCTACGAAGTTAAGGAGTTGAATTTTCCTGATTCTCTAAAACTTTTTAGTTTACATGCTTTCAAACAAAACTCTTCACAAGAAACAACGTACATGGACTTGGTAGAAGAGGTGTTGAGATATGCAAAAGGAATTCCATTAGTTCTCCAAATTTTGGGCTCATTAATTTATGGCAGAACAAGAGAAGCATGGGAAAGTCAGTTACAAAAGTTGGAAACATGCCAACATCTTAAAATTTTTAATGTATTAAAATTAAGTTATGATGGGCTTGATGACGAGGAGAAGAACATATTTCTTGACATCGCTTGCTTTTATAGGAGAGTCAAGGAGAGTGTGGTAGTAGAAATACTAGACGACTGTGGTTTTTCCTCTAAGATTGGAATGGATGTTCTAAAAGATAGATGTCTAATATCTATCTTGGATGGTAGAATTGAAATGCACGATCTCATACAAGAAATGGGTCAAGAAATTGTTCGTAAAGAGTGTTCTCAATATCCAAGAAAACGCAGTCGATTGTTCAAGGCTGACGAAATTCATGAGGTTTTAGAAAAGAGCAAGGGGTCAGATGCAATTCAGTGTATCTTACTAGATTTGCGGGAAATAAAAGAAGTTATAATACATGGACAAACTTTCCAAAAGATGGATAATCTTAGGATGCTTATGCTCGATGATTTTCGTTATGGGCATCTATGCGAATCCAAAGTGTTTCTTGCATCATCTCTTGTAATTCTACCAAACACTTTAAAGATTCTTTGTTGGAATGGTTTCCCTCAAAGATCTTTACCACCGAACTTTTGCCCACAAAATCTAGTGAGACTCGAAATGCCAAACTGCCATCTTGAACAACTTTGGGAAGAAGATCAGGTTTTTCAAGTTATCTATATTCCTTTATGTTCTAAACTTACAAGTATTTTTCTGTACTATACATCTACATGTTTTCCTTAG 1956 0.3732 MAESSSSFAGSASPTRYDVFLNFRGEDTRENFISHLYAALERKHIETYIDYRLQRGEEISPALQTAIEESKIYVLVFSENYASSTWCLNELTKILDCKKRYGRDVIPIFYKVNPSTVRKHEERYKDAFEEHELRFKENMDKVQEWKDALTEAAGFSGWDSNVIRSENSLVEKIVEDILEKLDLYSISSDRGIIGVEKQIESIRLLMHFESSDIRIIGICGMGGIGKTTISQQIYHTFAKQFDSRSLVLDTKKKIERDGIDTVREKYMSELLNEVPSPSLLYYSERLKRIRILIILDDVTDSLQLKQLLGRHDSFGQGSRIIITSRDRQVLKNAGAYDIYEVKELNFPDSLKLFSLHAFKQNSSQETTYMDLVEEVLRYAKGIPLVLQILGSLIYGRTREAWESQLQKLETCQHLKIFNVLKLSYDGLDDEEKNIFLDIACFYRRVKESVVVEILDDCGFSSKIGMDVLKDRCLISILDGRIEMHDLIQEMGQEIVRKECSQYPRKRSRLFKADEIHEVLEKSKGSDAIQCILLDLREIKEVIIHGQTFQKMDNLRMLMLDDFRYGHLCESKVFLASSLVILPNTLKILCWNGFPQRSLPPNFCPQNLVRLEMPNCHLEQLWEEDQVFQVIYIPLCSKLTSIFLYYTSTCFP 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04156 651 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 634 IPR044974 GO:0006952
Vian1g04156 651 SUPERFAMILY L domain-like 528 646 - -
Vian1g04156 651 PRINTS Disease resistance protein signature 379 393 - -
Vian1g04156 651 PRINTS Disease resistance protein signature 215 230 - -
Vian1g04156 651 PRINTS Disease resistance protein signature 285 299 - -
Vian1g04156 651 Gene3D - 179 338 IPR027417 -
Vian1g04156 651 SUPERFAMILY "Winged helix" DNA-binding domain 415 520 IPR036390 -
Vian1g04156 651 Gene3D - 14 178 IPR035897 -
Vian1g04156 651 Gene3D - 344 428 IPR042197 -
Vian1g04156 651 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
Vian1g04156 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 438 IPR027417 -
Vian1g04156 651 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Vian1g04156 651 Pfam NB-ARC domain 204 413 IPR002182 GO:0043531
Vian1g04156 651 SMART till_3 16 155 IPR000157 GO:0007165
Vian1g04156 651 Pfam TIR domain 17 183 IPR000157 GO:0007165
Vian1g04156 651 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 158 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04156 Vian-Chr1 64575329 64577789 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04156 12 622 WRKY Transcription Factor Family AT4G12020 35.209 5.26e-93 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04156 - - var:108318692 1272.3