Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04144 ATGGCCGGAAGTTCTTCTTCTTCAATTGACATGCCTGAATTTCCATCAAATTTTAATGTTCTTGCCATTGATACTGACCTTAGAGTTCTTGAATTCATCGACAAATCATGCAACGAGAATTCTCATAAAGTTAAGATATGCTCTGAATCTTCAAGTGCGGTCGACTTTTTGTTGGAAAAAGAAATAGACTTTCATTTGATTATCATGGAACTCCATATGCCAATGATGGATGGTTATGAATTTCTGCATTTTCTCGATAAAGAAGTAATTGATGTTCCTTTCATCATGATGTCTGAGGATCGTACTGTGCTTTCCCAAGAGAAGGCTTTTAAACTTGGAGCTTGCGATTATTGGGTTAAACCCTTATTTGAGTATAAGTTTTTGTTCGAGAATAAGCATTTGTGGTCACCTATGTTCCGACATCATTTCCACTACAGGCGCATAAGGAAAAATATTGATAGCTTGGAAGATGATGAAATAAGTGAGACAAGTTATAATAGTTCTGAATTCTCTTCTGATGGAGAAGTCGAAGCCGATGATGATAGTCCCCATAAGAAAGAATAG 564 0.3635 MAGSSSSSIDMPEFPSNFNVLAIDTDLRVLEFIDKSCNENSHKVKICSESSSAVDFLLEKEIDFHLIIMELHMPMMDGYEFLHFLDKEVIDVPFIMMSEDRTVLSQEKAFKLGACDYWVKPLFEYKFLFENKHLWSPMFRHHFHYRRIRKNIDSLEDDEISETSYNSSEFSSDGEVEADDDSPHKKE 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04144 187 Pfam Response regulator receiver domain 20 122 IPR001789 GO:0000160
Vian1g04144 187 MobiDBLite consensus disorder prediction 159 187 - -
Vian1g04144 187 SMART REC_2 18 129 IPR001789 GO:0000160
Vian1g04144 187 ProSiteProfiles Response regulatory domain profile. 19 135 IPR001789 GO:0000160
Vian1g04144 187 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 158 IPR045279 GO:0009736
Vian1g04144 187 SUPERFAMILY CheY-like 16 130 IPR011006 -
Vian1g04144 187 Gene3D - 17 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04144 Vian-Chr1 64451924 64452641 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04144 11 180 Response Regulator Gene Family AT2G25180 29.480 8.61e-16 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian1g04144 Response_reg 5.4e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04144 - - vra:106765414 246.899