Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04139 ATGGTGACAAGAAGAAAGCTCCTGAATTTGTTATCAGCTCTAAACGTTTCTGACCTACTTCCTCATCACGCCAATGCAATTAACCGTTTGTCGAAAACCCCCAAAACCCTTAGGGTTTATTACGGAACCCAATCATCCAAACCCCCCGAATACGAGATGCCATCGGTAACATGGGGCGTGATCCAAGGTCGCAAGGAGAAGCTCGTTTCGCGAGTAATCATCTTCGACTACCTCAAGGGTTTGGGAATCATCCCCGACGAGTTGCACGACCTCGAACTTCCCTCCACCGTCGACGTCATGCGCGAGCGCGTCGAGTTTCTCCAAAAAATAGGTTTAACTGTCGACGATATCAACAATTACCCTTTGATCTTAGGTTGCAGTGTCAGAAAAAACGTGATCCCCGTGTTGGGGTACTTAGAAAAAATTGGGATTGCAAGGCCCAAGCTTGGGGGATTCGTTAAGAATTACCCGCAGGTGTTGCATGCTAGTGTCATTGTTGAGCTTGCTCCTGTTGTTAAGTTCCTCAGGGGCCTTGATGTGGAGAAAGATGATATCGGGTATGTGTTGCAGAAGTACCCTGAGCTTCTTGGGTTCAAGCTTGAGGGTACTATGAGCACTTCGGTGGCTTATCTTGTTAGTATTGGTGTGAACCCTAGAGATATCGGTCCAATGGTTACTCAGTATCCTTATTTGTTAGGGATGAGAGTTGGAACTGTGATCAAGCCCTTGATTGATTACTTGGTCGATTTAGGGCTACCGAAGAAGGTTTTGGCTAGGATGTTGGAGAAGAGAGCTTACATTCTTGGCTATGATCTTGAGGAAACTGTGAAACCAAATGTGGAGTGTTTGATTAGTTTTGGTGTTAGAAGGGAGTGTTTGGCTTCAGTTATTGCTCAATATCCGCAGATTCTTGGGCTGCCTCTCAAGGCTAAGTTGTCCACGCAGCAGTACTTTTTCAGTTTGAAGCTTAAGGTTGATCCTGAAGGGTTTGCACGGGTGGTGGAGAACATGCCTCAGGTAGTTAGCCTCAACCAGCATGTGATTATGAAGCCCGTTGAATTCCTCCTTGGAAGGACTGTAACAGTGGAGGATGTGGCTAGAATGGTGATCAAGTGTCCTCAGTTGGTGGCATTGAGAGTTGAGCTGATGAAAAACAGCTATTACTTCTTTAAGAGTGAGATGGGGAGGCCATTGAAAGAGCTTGTGGAATTCCCGGAGTACTTTACTTATAGTTTGGAGTCTAGAATCAAACCCAGATACCAGAGGCTCAAGAGTAAGGGGATAAGATGTTCGTTGAATTGGATGCTGAATTGTAGTGACCAGAGGTTTGAAGAGAGGTTGCAGGGTCATTACATTGAAACTGAAAGTGTAGGTCCCAGATTCTGTATGGGAGGGAAATTGGAGCTACCGGGGAATGACATAATGTCTGATGACGAAGCTGAGAGTGATGATGAAATACTATATACAAGAACTGTTTCTCTATAG 1485 0.4532 MVTRRKLLNLLSALNVSDLLPHHANAINRLSKTPKTLRVYYGTQSSKPPEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELHDLELPSTVDVMRERVEFLQKIGLTVDDINNYPLILGCSVRKNVIPVLGYLEKIGIARPKLGGFVKNYPQVLHASVIVELAPVVKFLRGLDVEKDDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTVIKPLIDYLVDLGLPKKVLARMLEKRAYILGYDLEETVKPNVECLISFGVRRECLASVIAQYPQILGLPLKAKLSTQQYFFSLKLKVDPEGFARVVENMPQVVSLNQHVIMKPVEFLLGRTVTVEDVARMVIKCPQLVALRVELMKNSYYFFKSEMGRPLKELVEFPEYFTYSLESRIKPRYQRLKSKGIRCSLNWMLNCSDQRFEERLQGHYIETESVGPRFCMGGKLELPGNDIMSDDEAESDDEILYTRTVSL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04139 494 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Vian1g04139 494 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Vian1g04139 494 SMART mt_12 398 429 IPR003690 GO:0003690|GO:0006355
Vian1g04139 494 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Vian1g04139 494 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Vian1g04139 494 SMART mt_12 114 145 IPR003690 GO:0003690|GO:0006355
Vian1g04139 494 SMART mt_12 331 361 IPR003690 GO:0003690|GO:0006355
Vian1g04139 494 SMART mt_12 294 326 IPR003690 GO:0003690|GO:0006355
Vian1g04139 494 SMART mt_12 366 397 IPR003690 GO:0003690|GO:0006355
Vian1g04139 494 Pfam mTERF 136 444 IPR003690 GO:0003690|GO:0006355
Vian1g04139 494 PANTHER CGI-12 PROTEIN-RELATED 139 451 IPR003690 GO:0003690|GO:0006355
Vian1g04139 494 Gene3D Transcription termination factor 3, mitochondrial 241 454 IPR038538 -
Vian1g04139 494 Gene3D Transcription termination factor 3, mitochondrial 100 240 IPR038538 -
Vian1g04139 494 FunFam Transcription termination factor mterf4, chloroplastic 100 237 - -
Vian1g04139 494 FunFam Transcription termination factor MTERF4, chloroplastic 238 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04139 Vian-Chr1 64414337 64415821 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Vian1g04139 mTERF 2.5e-108 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04139 K15032 - gmx:100809590 898.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04139 1 64414337 64415821 Vian8g01428 8 33631153 33632835 PCT