Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04129 ATGGCCGAAAGTTCTTCTATTGAACCGCCTGAATTTCCATTAAAATCAAATTATAATGTCCTTGCCATTGATACTGACCTCAAAGTTCTTGAATTCATCGAGAAATCATGCAACAAGTATTCTCATCAAGTTAAGATATGCTCTGAAACTTCAAGTGCGATCAAACTTTTGCTGGAAGAAGGAGTAGAGTTTGATTTGATTATCATGGAACTCCATATGCCAATGATTGATGGCTATGAATTTCTGGAAATGCTCGATGATGAAGCAATTGATGTTCCTTTCATCATGATGTCTGAGGATCGTACTCCGCTTTCCCAAAAGAAGGCTTTTAAACATGGAGCTTGCGATTATTGGATTAAACCCTTCTTTAAGAATGAGTCTTTGTTCGAGAATAAGAAGTTGTGGTCACCTATGTATCGACATCATTTCTACTTCAGGCGCAATATCTTGGAAGAAGATGAAGAAAGTGATGAAAAAGGTGAGACAGGTAATAACTCTGATGGAGAAGCCGAAGCCGATGATGATACTCTCCATAAGAAAGAATAG 546 0.3773 MAESSSIEPPEFPLKSNYNVLAIDTDLKVLEFIEKSCNKYSHQVKICSETSSAIKLLLEEGVEFDLIIMELHMPMIDGYEFLEMLDDEAIDVPFIMMSEDRTPLSQKKAFKHGACDYWIKPFFKNESLFENKKLWSPMYRHHFYFRRNILEEDEESDEKGETGNNSDGEAEADDDTLHKKE 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04129 181 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 163 IPR045279 GO:0009736
Vian1g04129 181 MobiDBLite consensus disorder prediction 153 181 - -
Vian1g04129 181 SUPERFAMILY CheY-like 16 125 IPR011006 -
Vian1g04129 181 Gene3D - 16 142 - -
Vian1g04129 181 MobiDBLite consensus disorder prediction 161 181 - -
Vian1g04129 181 ProSiteProfiles Response regulatory domain profile. 19 135 IPR001789 GO:0000160
Vian1g04129 181 SMART REC_2 18 128 IPR001789 GO:0000160
Vian1g04129 181 Pfam Response regulator receiver domain 20 125 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04129 Vian-Chr1 64324716 64325459 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04129 11 180 Response Regulator Gene Family AT2G25180 30.000 2.40e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian1g04129 Response_reg 2.8e-15 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04129 - - vra:106765414 224.557