Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04113 ATGGCCGGAAGTTCTTCTTCTTCAATTGAGATGCCTAAATTTCCATCAAATCTTAATGTCCTTGCCATTGATACTGATCTCAAAGTTCTTAAATTCATCGAGAAATCATGCAACGAGAATTCTCATCAAGTTAAGATATGCTCTGAATCTTCAAGTGCGGTCGATCTTTTGCTGAAAAAAGAAATAGACTTTCATTTGATTATCATGGAACTCCATATGCCAATAATGGATGGCTTTGGATTTCTGCGTTTTCTCAAAAAAGAAGTAATTGATGTTCCTTTCATCATGATGTCTGAGGATGATACTGACCTATCCCATAAGAAGGCTTTTAAACTTGGAGCTTGCGATTATTGGGTTAAACCCTTCTTAGAGTATGCGTTTTTGTTTGAGAGGAAGCATTTGTGTTCACCTATGATGCGACATCATTTCCACTTCAGGCGCATAAGGAAAATTGATAGCTTGGAAGATGATGAAATAAGTGACACAAGTTATAATTCTGAATTCTCTTCTGAGGGAGAAGCCGAAGCTGATGATGATACTCCCCATGAGAAAGAATAG 558 0.3728 MAGSSSSSIEMPKFPSNLNVLAIDTDLKVLKFIEKSCNENSHQVKICSESSSAVDLLLKKEIDFHLIIMELHMPIMDGFGFLRFLKKEVIDVPFIMMSEDDTDLSHKKAFKLGACDYWVKPFLEYAFLFERKHLCSPMMRHHFHFRRIRKIDSLEDDEISDTSYNSEFSSEGEAEADDDTPHEKE 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04113 185 MobiDBLite consensus disorder prediction 160 185 - -
Vian1g04113 185 ProSiteProfiles Response regulatory domain profile. 19 135 IPR001789 GO:0000160
Vian1g04113 185 Pfam Response regulator receiver domain 20 122 IPR001789 GO:0000160
Vian1g04113 185 SUPERFAMILY CheY-like 16 127 IPR011006 -
Vian1g04113 185 Gene3D - 17 144 - -
Vian1g04113 185 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 122 IPR045279 GO:0009736
Vian1g04113 185 SMART REC_2 18 131 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04113 Vian-Chr1 64184724 64185455 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04113 2 121 Response Regulator Gene Family AT4G16110 36.667 1.33e-18 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian1g04113 Response_reg 4.5e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04113 - - vra:106765414 216.468