Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04109 ATGGAAAAGCTCATTTTCAACTGTTTCATTGGATGCTGTCTTCTTTATTCTCTCTTGCCTGTGCATGGCAAACCATTGTCATGCAATGAAACACCCTACCCCCATGTGTGCAAACATTACGTTGTCACTACCAACACACTATCAACCCTAGATGCTCCGTCCTCTTCCTTCCACGACGTGGCCCTTAAGGTCACCGTGGATCAAGCCATGGAGCTTTATAAACTTGTCTCAAACATGGACCTAAATAATTTCAAGGATAAACGAGCCAAATCGGCTTGGGAAGATTGTTTGGAGCTCTATGAGGACACACTTTATCAACTCAAACGCTCAGCGAACTCGAACAATCTAAATGACAGGTTGACTTGGCAAAGTGCATCCATTGCCAATCACCAAACATGCCAAAACGGTTTCACTGAACTCAACGTTCCCTCTCACCTAAACTACTTCCCCAACATGTTAAGCAATTTCTCCAAACTGCTTAGCAATTCCTTGTCCCTTAGCAAGGCAATGACTTTGACATCATTGTCATCGACTAAACAAAATGGTGGGCGAAAGCTGCTTTCAGATGGCTTCCCCTCTTGGATCTCTCATTCAGACAGAAGGCTTCTTCAGGAAACAACATCAAAAGCTGATGTTGTGGTGGCACAGGATGGCAGTGGGAACTATAAAACCATCTCAGAGGGTGTGGCTGCAGCTTCTAAGCTCAGTGGGAAAGGGCGTGTTGTGGTGCACGTCAAAGCTGGTGTTTACAAAGAGAATATTGATATCTCGAGAACTGTGAAAAACTTGATGATCATCGGAGATGGCATGGGTGCTACTATTGTTACTGGTAGTAGAAACGCGCAAGATGGTTCCACTACTTTTCGTTCTGCTACTTTTGGTTGGTCTGAGTGGAGCGGAAACTTTGCACTGAGCACTCTATATTACGGTGAACATGCGAACACAGGAGCAGGTGCCGGCACCGGAGGGAGGGTGAATTGGGGAGGTTTTCGTGTGCTCTCCAGCACTGAGGCTGTGAAGTTCACCGTCGGAGAATTCTTGGCCGGTGGCTCGTGGATTCCTGGGAGTGGCGTGCCCTTCGACGCAGAGGGTACACAAAATGCTGTACTTCAGGTTGTGGGCTTCGTCTTCCCTTGCCTTAAGGACACTCTGTTCCTTTTGTCGACAGAACTTCAAGGAAGCATCGATCCATATCCGTGA 1200 0.47 MEKLIFNCFIGCCLLYSLLPVHGKPLSCNETPYPHVCKHYVVTTNTLSTLDAPSSSFHDVALKVTVDQAMELYKLVSNMDLNNFKDKRAKSAWEDCLELYEDTLYQLKRSANSNNLNDRLTWQSASIANHQTCQNGFTELNVPSHLNYFPNMLSNFSKLLSNSLSLSKAMTLTSLSSTKQNGGRKLLSDGFPSWISHSDRRLLQETTSKADVVVAQDGSGNYKTISEGVAAASKLSGKGRVVVHVKAGVYKENIDISRTVKNLMIIGDGMGATIVTGSRNAQDGSTTFRSATFGWSEWSGNFALSTLYYGEHANTGAGAGTGGRVNWGGFRVLSSTEAVKFTVGEFLAGGSWIPGSGVPFDAEGTQNAVLQVVGFVFPCLKDTLFLLSTELQGSIDPYP 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04109 399 FunFam Pectinesterase 25 170 - -
Vian1g04109 399 SUPERFAMILY Pectin lyase-like 293 361 IPR011050 -
Vian1g04109 399 NCBIfam pectinesterase inhibitor domain 27 170 IPR006501 GO:0004857
Vian1g04109 399 CDD PMEI-like_3 26 143 - -
Vian1g04109 399 Gene3D - 205 293 IPR012334 -
Vian1g04109 399 SMART PMEI_2 21 166 IPR006501 GO:0004857
Vian1g04109 399 Pfam Pectinesterase 294 349 IPR000070 GO:0030599|GO:0042545
Vian1g04109 399 Pfam Pectinesterase 211 293 IPR000070 GO:0030599|GO:0042545
Vian1g04109 399 Gene3D - 294 364 IPR012334 -
Vian1g04109 399 ProSitePatterns Pectinesterase signature 1. 237 256 IPR018040 -
Vian1g04109 399 Gene3D Invertase/pectin methylesterase inhibitor family protein 26 171 IPR035513 -
Vian1g04109 399 PANTHER PECTINESTERASE 294 354 - -
Vian1g04109 399 Pfam Plant invertase/pectin methylesterase inhibitor 27 166 IPR006501 GO:0004857
Vian1g04109 399 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 170 IPR035513 -
Vian1g04109 399 SUPERFAMILY Pectin lyase-like 206 293 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04109 Vian-Chr1 64124240 64127926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04109 294 361 Carbohydrate Esterase AT1G23200 60.870 4.08e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04109 - - vum:124848015 568.155