Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04107 ATGGGTATAAAGAGATACAGTTTCTCTGATGTTAAGAAAATGACGGACTCCTTCAAAATTAAACTGGGGGAAGGTGGTTATGGATCTGTGTACAAAGGAAAGTTACTCAACGGTTGTTCGGTGGCAGTGAAGATACTGAACGAATCAAAGGAGAATGGCGAAGAGTTTATCAATGAGGTTGCAAGCATAAGCAAAACATCTCATGTTAACATTGTCTCTCTCCTTGGATTCTGCCTAGATGGAAGCAGAAAAGCCCTCGTGTATGAGTTTATGTCCAATGGTTCACTTGAGAAGTACATTCACAAGAAAGCAGCAGAAAAAAATAAAACCAGTACTCCACCATTGGGTTGGGACAGATTGAACCAGATTGCAATAGGCATAGCTCGAGGACTTGAGTATTTGCATAAAGGATGCAACACTCGGATTCTGCATTTTGACATCAAGCCACATAACATCCTTTTGGACGAAACTTACCGCCCAAAGATATCAGATTTTGGACTTGCTAAGCTGAGCACAATAGATGAAAGCATTATATCAATGTCAAATGCTAGAGGGACAGTAGGGTATGTGGCTCCTGAAGTGTTCAATAAAAGTTTTGGAGGTGTTTCACACAAGTCTGATGTTTACAGCTATGGAATGATGCTGCTAGAAATGGTTGGAGGACAGAAGAACATCAACGTTGAAGCTAGTCGCTCAAGCGAACTATATTTCCCACATTTGGTTATTTACAAGAAGCTTGAGCAGGGCAATGATTTGGGACTTGAGGGGATATTGTCTGGTGAGGAGAATGAGATAGCAAAGAGAATGACTACGGTGGCTTTGTGGTGCATTCAGACAATTCCTTCTCACAGACCTACCATAAGTAGAGTGATTGACATGTTGTTAGGTAGTGCAGATTCCTTGGAAATACCACCAAAACCTTTCCTCTCTTCTCCTCCAAGATCAACAGGTTTTTCCACTGCAATATCCGAATCATTTGATAGTCTCTCGTGCAGCTCATAG 1002 0.4142 MGIKRYSFSDVKKMTDSFKIKLGEGGYGSVYKGKLLNGCSVAVKILNESKENGEEFINEVASISKTSHVNIVSLLGFCLDGSRKALVYEFMSNGSLEKYIHKKAAEKNKTSTPPLGWDRLNQIAIGIARGLEYLHKGCNTRILHFDIKPHNILLDETYRPKISDFGLAKLSTIDESIISMSNARGTVGYVAPEVFNKSFGGVSHKSDVYSYGMMLLEMVGGQKNINVEASRSSELYFPHLVIYKKLEQGNDLGLEGILSGEENEIAKRMTTVALWCIQTIPSHRPTISRVIDMLLGSADSLEIPPKPFLSSPPRSTGFSTAISESFDSLSCSS 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04107 333 SMART serkin_6 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g04107 333 Gene3D Transferase(Phosphotransferase) domain 1 91 302 - -
Vian1g04107 333 PIRSF ILK 6 300 - -
Vian1g04107 333 ProSitePatterns Protein kinases ATP-binding region signature. 22 44 IPR017441 GO:0005524
Vian1g04107 333 PANTHER RUST RESISTANCE KINASE LR10-RELATED 5 311 IPR045874 GO:0004672
Vian1g04107 333 Pfam Protein kinase domain 21 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g04107 333 Gene3D Phosphorylase Kinase; domain 1 1 90 - -
Vian1g04107 333 SUPERFAMILY Protein kinase-like (PK-like) 4 294 IPR011009 -
Vian1g04107 333 FunFam PR5-like receptor kinase 91 306 - -
Vian1g04107 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Vian1g04107 333 ProSiteProfiles Protein kinase domain profile. 16 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g04107 333 FunFam serine/threonine-protein kinase PBS1-like 1 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04107 Vian-Chr1 64103478 64104479 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04107 3 312 Receptor kinase-like Gene Family AT5G38280 57.962 2.57e-118 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vian1g04107 Pkinase 7.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04107 - - vra:106766588 645.966