Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04104 ATGGCCGAAAGTTCTTCAATTGACCCGCCTGAATTTCCATCAAATTTTAATGTCCTTGCCATTGATACTGACCTCAAAGTTCTTGAATTCATCGAGAAATCATGCAACAAGAATTCTCATCAAGTTAAGATATGCTCTAAATCTACAAGTGCGGTCGATCTTTTGCTGAAAAAAGAAATAGACTTTCATTTGATTATCATGGAACTCCATATGCCATTGATTGATGGCTATGAATTTCTGGAAATTCTCGATGATGAAGCAATTGATGTTCCTTTCATCATGATGTCTGAGGACTGTACTCCTCTTTCCCAAGAGAAGGCTTTTAGACTTGGAGCTTGCGATTATTGGATTAAACCCTTCTTCTTTGAGTATGAGTCTTTGTTCGAGAATAGGAATTTGTGGTCACCTATGATTCGACATCATTTCTACTTCAGGCGCATAGGGATAAATATTGATAGCTTGAAAGGTGATGAAAAAGGTGATGAAAAAGGAGAGACAGGTTATAATTCTGATGGAGAAGCGGAAGCCGATGATGATACTCCCCATAAGAAAGAATAG 558 0.3781 MAESSSIDPPEFPSNFNVLAIDTDLKVLEFIEKSCNKNSHQVKICSKSTSAVDLLLKKEIDFHLIIMELHMPLIDGYEFLEILDDEAIDVPFIMMSEDCTPLSQEKAFRLGACDYWIKPFFFEYESLFENRNLWSPMIRHHFYFRRIGINIDSLKGDEKGDEKGETGYNSDGEAEADDDTPHKKE 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04104 185 Gene3D - 14 133 - -
Vian1g04104 185 ProSiteProfiles Response regulatory domain profile. 17 133 IPR001789 GO:0000160
Vian1g04104 185 SUPERFAMILY CheY-like 14 123 IPR011006 -
Vian1g04104 185 MobiDBLite consensus disorder prediction 155 185 - -
Vian1g04104 185 PANTHER TWO-COMPONENT RESPONSE REGULATOR 16 158 IPR045279 GO:0009736
Vian1g04104 185 SMART REC_2 16 128 IPR001789 GO:0000160
Vian1g04104 185 Pfam Response regulator receiver domain 18 120 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04104 Vian-Chr1 64076539 64077247 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04104 2 185 Response Regulator Gene Family AT4G16110 31.522 8.80e-20 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vian1g04104 Response_reg 2.6e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04104 - - vra:106765414 250.366