Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04103 ATGACCAATTATTTTGAGTCCAAACTGGGACAAGGTGGTTATGGTGAAGTATATAAGGGAAATCTATGCAACAAAGCTCCCGTGGCTGTGAAGCTACTGAATGCTTCCAAGGGAAACGGGGAAGAATTTATCAACGAGGTTATAAGCATCAGTAGAACATCCCATGTAAACATCGTTAATCTCCTTGGTTTTTGTCTTGAAGGCAAGAAGAAGGCTATTATATACGATTTTATGCCAAATGGATCACTTGAAAAGTATATTCCCAACAAGAATTTGGAAACTGATCCACCTTTGAGTTGGCAAAGGCTACACCACATTGCCGAAGGAATAGCCAAAGGATTGGAGTACTTGCACAGAGGCTGCAACACTCGGATATTACATTTTGACATAAAACCAAGCAACATTCTTTTGGACAAAAATTTCTGTCCCAAAATCTCTGATTTTGGGATGGCCAAGCTCTGCTCAAACACACAAAGTATCATATCTATGTATGGTGCTAGAGGGACAGTTGGGTACATAGCTCCAGAGGTGTGGAACAGAAGCTTTGGAGGGGTTTCGTATAAATCTGATGTTTATAGTTACGGAATGATGATTTTGGAAATGGTTGGAGGAAGGCAAAATATCAGCATTGAAGCAAGTCATTCAAGTGAGACATACTTTCCCCATTGGATATACAAGCACGTTGAGGTGGGAAAAAATTTGGCATGGCATGAAGGTATGACCCCAGAGGAAAATGAAATTTGTAAGAAAATGATTATTGTGGGATTGTGGTGCATACAGACAATCCCTTCTGACAGGCCTGCTATGAGTCGGGTGGTTGAAATGTTAGAAGGAAGCACGGATCAATTGCAAATTCCACCCGAGCCATTCATATTTAGTCCTATGAAAACTGAAGTGGATATTTGCACCACTAGTAGCAGCGATTGA 927 0.4078 MTNYFESKLGQGGYGEVYKGNLCNKAPVAVKLLNASKGNGEEFINEVISISRTSHVNIVNLLGFCLEGKKKAIIYDFMPNGSLEKYIPNKNLETDPPLSWQRLHHIAEGIAKGLEYLHRGCNTRILHFDIKPSNILLDKNFCPKISDFGMAKLCSNTQSIISMYGARGTVGYIAPEVWNRSFGGVSYKSDVYSYGMMILEMVGGRQNISIEASHSSETYFPHWIYKHVEVGKNLAWHEGMTPEENEICKKMIIVGLWCIQTIPSDRPAMSRVVEMLEGSTDQLQIPPEPFIFSPMKTEVDICTTSSSD 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04103 308 SMART serkin_6 3 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g04103 308 ProSiteProfiles Protein kinase domain profile. 3 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g04103 308 Gene3D Transferase(Phosphotransferase) domain 1 82 286 - -
Vian1g04103 308 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Vian1g04103 308 FunFam PR5-like receptor kinase 78 288 - -
Vian1g04103 308 SUPERFAMILY Protein kinase-like (PK-like) 5 277 IPR011009 -
Vian1g04103 308 Gene3D Phosphorylase Kinase; domain 1 4 81 - -
Vian1g04103 308 PIRSF ILK 4 285 - -
Vian1g04103 308 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 294 IPR045874 GO:0004672
Vian1g04103 308 Pfam Protein tyrosine and serine/threonine kinase 5 276 IPR001245 GO:0004672|GO:0006468
Vian1g04103 308 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04103 Vian-Chr1 64063630 64064556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04103 1 300 Receptor kinase-like Gene Family AT5G38280 58.224 1.00e-122 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vian1g04103 PK_Tyr_Ser-Thr 9.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04103 - - gmx:100781977 580.482