LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g04102	ATGGCCGCCAAACGGTTTTTGGATGATTCTGATCAAGATACCAATGGTGATAAACGGAGGAGACCTACTTCAAGACCTTCTTTTGCTTCGGTAATTGGAGAAGTCGTCATGGTCAAGAACTTGCAGAACCTTTTCTCAGGCTTGGAACCCTTGCTTAGGAGAGTGGTGAACGAAGAGATGGAGCGAGTGATGGGGCATTGTGTGCCGCGTTCGATAACCAGGTCCCCTTCGTTGAGGATCCAAGCATTGGAGCAACCAACGAGCTACGAACTCATGTTCGAGAAGAAGCTGATGCCAACTATATTCACAGGAAGCAGAATAGTAGATACAGATGGGAACCCCCTCCTTGTTGTTCTTGTCGATAAAAGCGGTGGTCAGACGGTTCGCACGAGTCTCCCCCACCCCATCAAGCTAGAAATCGTGGTGCTCGATGGAGATTTTCCTTCCACCGGTGATAACAACGAGTCGTGGACGAGTGAGGAACTCAACAACCGCATAGTGAAGGAGAGAACGGGAAAGAGGCCGCTGCTCACTGGAGAATTGAATCTGACCATGAGAGATGGAATTGCACCAATTGAAGACATTGAATTCACTGATAATTCCAGTTGGATAAGAAGCAGAAAGTTCAGAGTTGCTGTTCGAGTTGTTCCTGGGACTAATCAAACTGTTAGAATTCGTGAAGGCATGACCGAACCATTTATTGTCAGGGATCACCGTGGTGAATTGTACAAGAAACATCACCCACCTATGCTGAATGACGAAGTATGGCGCCTAGAGAAGATCGGAAAAGACGGAGCTTTCCACAAAAAGCTGTCCAAGGAGGGAATAAACAGTGTGCAAGACTTTCTCAAGTTGTCTGTTGTTGATGCCCAGAAGCTCAGAAGGATTTTGGGCGCTGGGATGTCAGAGAGAATGTGGGATGTGACAATCAAGCATGCAAAGACATGTGAGAAGGGGAAGAAATACTATGTCTTCCGTGGGCAAAATTTTACCGTCTTTCTCAATTCCATTTGCCAATTGGTTAAAGCTGACATTAATGGCCAAAGTTTTCCGGGAAGCGAGTTAAGCAACTTCACAAAGGGCTATATGGAAAAACTGGTGAGAGAAGCATATACTAGATGGAATGACTTGGAGGAAATTGACGAGGCTCTGTTAACCCAAGGTGAGACCATGGAGCAAATTCCAAACAATCTTCAAGCATATGATCAGAACGAGTACTATGCATCAACACATAATGCACAGATTGGTGGCAGTGAGTGGGGTGTGAATGCAACATTTGGCACAACATCATTTGTGAATAACGCTCTTCCAGCTTTACCTTACAGCTTCTCAGATTCACAATCTGACAGTGATGGTGCCACAAGGTGGAACTAG	1374	0.4571	MAAKRFLDDSDQDTNGDKRRRPTSRPSFASVIGEVVMVKNLQNLFSGLEPLLRRVVNEEMERVMGHCVPRSITRSPSLRIQALEQPTSYELMFEKKLMPTIFTGSRIVDTDGNPLLVVLVDKSGGQTVRTSLPHPIKLEIVVLDGDFPSTGDNNESWTSEELNNRIVKERTGKRPLLTGELNLTMRDGIAPIEDIEFTDNSSWIRSRKFRVAVRVVPGTNQTVRIREGMTEPFIVRDHRGELYKKHHPPMLNDEVWRLEKIGKDGAFHKKLSKEGINSVQDFLKLSVVDAQKLRRILGAGMSERMWDVTIKHAKTCEKGKKYYVFRGQNFTVFLNSICQLVKADINGQSFPGSELSNFTKGYMEKLVREAYTRWNDLEEIDEALLTQGETMEQIPNNLQAYDQNEYYASTHNAQIGGSEWGVNATFGTTSFVNNALPALPYSFSDSQSDSDGATRWN	457

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g04102	457	PANTHER	OS02G0177800 PROTEIN	1	448	IPR012416	GO:0005516
	Vian1g04102	457	Pfam	Calmodulin binding protein central domain	250	316	IPR046830	-
	Vian1g04102	457	Pfam	Calmodulin binding protein C-terminal domain	321	380	IPR046829	-
	Vian1g04102	457	MobiDBLite	consensus disorder prediction	1	25	-	-
	Vian1g04102	457	Pfam	Calmodulin binding protein-like N-terminal domain	89	238	IPR046831	-
	Vian1g04102	457	MobiDBLite	consensus disorder prediction	1	24	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g04102	Vian-Chr1	64054570	64057859	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian1g04102	3	401	Calmodulin-binding Proteins	AT5G57580	46.929	3.05e-117	355

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g04102	-		-	vra:106766894	888.641