Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04099 ATGGCAACGCCGTTGGACGGAGGAGGAGTGGCGGTGCTCTCGAATTCCGTCAACAAGGTAGACTCCGCCTCGGCTCTCAAGGACGACTTGAAGTGCTCGAAACCGGAGTCGCCGATTTTGATTTTCTTGTTTTTTCACAAAGCAATTCGGAATGAGCTTGAGGCGCTGCACCGATTGGCCTTGGCATTCGCCACCGGCAACCGCTCCGACATTAAGCCGCTCTCCGAGCGCTACCATTTCCTCAGCTCCATGTACAGACACCACTCCAATGCTGAAGACGAGGTGATATTTCCAGCTTTAGATATACGTGTGAAGAATGTAGCACAGACATATTCTCTCGAACACAAGGGTGAAAACAACCTTTTTGATCATCTATTTGAGCTTTTAAATTCTTCCATCAATAGTGATGAAACTTTTCCAAGAGAGTTAGCTTCCTGCACAGGAGCTTTGCAGACGTCAGTTAGTCAACATATGGCAAAAGAAGAGGAGCAGGTATTTCCTCTGCTTATCGAGAAGTTTTCTCTGGAGGAACAGGCATCCTTAGTTTGGCAGTTCCTGTGCAGTATTCCTGTGAATATGATGGTCGATTTTCTACCGTGGCTTTCAACATCTATATCACCTGATGAATCTCAGGATTTGCGAAATTGCTTAATCAAGATAGTGCCACAGGAGAAGCTTCTTCAAAAGGTTGTTTTCACTTGGATGGAAGGGAGAGGTAGGGCTAACTCAGTTGAAAGTTGTGTAGATCATTCTCAAGTTTTATGCAGTTCTAGGTCATTACCCAATCAGGTTGAGAAAGTAAACTGTGCCTGTGAATCTACAACATGTGGAAAAAGGAAATATTCTGGATCTATGATAGGCGTTTCTGATACCACTGGAGCACATCCTATAGATGAAATATTACTTTGGCATAATGCAATAAAAAAAGAGTTGAGTGAGATAGCAGTGGAGGCCAGAAAGATACAACATTCTGGAGATTTTACTAATCTGTCTGCTTTTAATGAAAGATTTCAATTCATAGCCGATGTTTGCATATTTCACAGTATTGCTGAGGACAAGGTTATTTTTCCCGCGGTAGATGGAGAGTTTTCTTTCTTTCAGGAGCATGCTGAAGAAGAAAGCCAATTTAATGACTTCCGAAGTTTGATTGAAAATATTCAAAGTGAAGGAGCATCATCCAATTCAGATGTTGAATTTTACTCCAAGTTATGCACACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCACAATGAAGAAGTTCAGGTTCTTCCTTTGGCAAGAAAGCACTTTAGCTTTAGAAGGCAATGTGAACTTTTGTATCAAAGCTTATGTATGATGCCTTTGAAATTAATTGAGCGTGTCCTGCCATGGTTGGTAGGATCTTTTACTGAAGATGAAGCAAAGATGTTTCAGAGAAATATGCAGTTGGCAGCTCCAGCAACAGATTCTGCTCTAGTTACACTCTTCTGTGGATGGGGTTGCAAGGCTCGTAGTGAAGTATTAGCAGAATCAGGAGAGAACAAAAGAGAAGTCAAACGAAACATATTGAAGTTGCACAAAAATGAAGATTTGCCAGAAACTTCGGAGACTGAAAGCATTGAGAAACAATGTTGTAGTTCACGGTCTTGTTGTGTGCCGGGTTTGGGAGTAAATAGTAACAATTTAGGGTTGAGCTCTCTCTCTACAGCCAAGTCCTTACGCTCCTTGTCTTTCAGCTCTTCTGCCCCATCTATTAATTCCAGTCTGTTCGTATGGGAAACAGAGCGAGGGTCTTGCAATGTGGGATGTACACAAAGACCAATTGATACAATCTTTAAATTCCATAAAGCCATACGCAAAGACTTGGAGTATCTTGATGTTGAATCAGGAAAGCTGCGAGATGGTGATGAGACAATTATTCGGCAATTTAATGGAAGATTTCGACTCTTGTGGGGTTTATATAGAGCTCATAGTAATGCTGAAGATGATATAGTATTTCCAGCTTTGGAATCCAAAGAGGCGCTTCATAATGTGAGTCATTCATACATGCTAGACCATAAGCAGGAAGAAAAATTGTTTGAAGACATTTCCTGTGTTCTTTCAGAGTTTTCTGTCATTCATGAATCCTTGCAGATGACCCACATGGCTGAGAGTTTAAGTGAAAGTAATTTTGAAACCTCTGATGGCAATAATACTAGTGATGTCGTAAAAAAATATAATGAACTTGCTACTAAGCTTCAGGGGATGTGCAAATCCATAAGAGTGACCCTTGATCAGCATCTCTTCAGAGAAGAATGTGAACTGTGGCCATTGTTTGGGAGACATTTTACTGTGGAAGAACAAGACAAGATAGTGGGTCGGATAATTGGAACAACGGGTGCTGAAGTTCTCCAATCAATGTTACCATGGGTAACATCTGCACTTACTCAGGATGAACAGAACAGAATGATGGATACATGGAAACAAGCAACAAAGAACACTATGTTCAATGAATGGCTTAGTGAATGCTGGAAAGAGAGTCCAGTGTCTATAGCACAGGAAGAAGCATCAGATCATAGCACTTCTCCGAGAGGTGCTGAAGGTCGAGAAAGCTTGGGCCACAATGATCCGATGTTCAAGCCAGGTTGGAAAGACATATTTCGAATGAATCAGAATGAACTTGAGTCGGAGATCCGGAAGGTATATCGAGACTCAACACTTGATCCAAGGAGAAAGGCATATCTTGTGCAGAATCTATTGACAAGTCGATGGATAGCTGCCCAGCAGCAATCACCTAAAGCACTTTCGGAAGGATCATCTAACAGTGTAGAAATAGTAGGACTCTCACCATCATTTCGAGACCCAGAGAAACTTGTATTTGGGTGTGATCACTATAAGAGAAATTGCAAGCTTCGGGCTGAATGTTGTGGCAAGTTATTTACTTGCAGATTTTGTCATGACAATGTCAGTGATCACTCGATGGATAGAAAAGCAACATTGGAAATGATGTGTATGCACTGCCTGAATATACAGCCTATAGGGCCTATGTGCATGACACCTTCATGTAATGGATTTTCAATGGCGAAGTACTATTGCAATATATGCAAATTTTTTGATGATGAAAGGAACGTATATCATTGCCCATTTTGCAATTTATGCCGTGTTGGACAAGGGCTTGGGATCGATTATTTTCATTGCATGAAATGCAATTGTTGCTTGGGGATTAAGTCAACATCTCATAAATGTCTCGAGAAAGGTTTAGAAATGAACTGTCCAATTTGTTGCGATGACTTGTTCACTTCAAGTGCTACGGTCAGAGCTCTACCTTGCGGCCACTATATGCATTCTGCTTGCTTCCAGGCATACACGTGCAGTCACTACACATGTCCAATCTGCAGCAAGTCATTGGGAGATATGGCGGTTTACTTTGGTATGCTTGATGCCCTATTGGCTGCTGAGGAGCTTCCTGAAGAGTACAGGGAACGCTGTCAGGACATACTCTGCCATGACTGCGATCGGAAGGGCTCTTCACGCTTCCACTGGTTGTACCACAAATGTGAATTTTGTGGCTCTTATAATACCCGGGTTATCAAGTGTGAGACGTCAAACTCCAGCTGCTCTTAG 3591 0.4185 MATPLDGGGVAVLSNSVNKVDSASALKDDLKCSKPESPILIFLFFHKAIRNELEALHRLALAFATGNRSDIKPLSERYHFLSSMYRHHSNAEDEVIFPALDIRVKNVAQTYSLEHKGENNLFDHLFELLNSSINSDETFPRELASCTGALQTSVSQHMAKEEEQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMVDFLPWLSTSISPDESQDLRNCLIKIVPQEKLLQKVVFTWMEGRGRANSVESCVDHSQVLCSSRSLPNQVEKVNCACESTTCGKRKYSGSMIGVSDTTGAHPIDEILLWHNAIKKELSEIAVEARKIQHSGDFTNLSAFNERFQFIADVCIFHSIAEDKVIFPAVDGEFSFFQEHAEEESQFNDFRSLIENIQSEGASSNSDVEFYSKLCTHADHIMETIQRHFHNEEVQVLPLARKHFSFRRQCELLYQSLCMMPLKLIERVLPWLVGSFTEDEAKMFQRNMQLAAPATDSALVTLFCGWGCKARSEVLAESGENKREVKRNILKLHKNEDLPETSETESIEKQCCSSRSCCVPGLGVNSNNLGLSSLSTAKSLRSLSFSSSAPSINSSLFVWETERGSCNVGCTQRPIDTIFKFHKAIRKDLEYLDVESGKLRDGDETIIRQFNGRFRLLWGLYRAHSNAEDDIVFPALESKEALHNVSHSYMLDHKQEEKLFEDISCVLSEFSVIHESLQMTHMAESLSESNFETSDGNNTSDVVKKYNELATKLQGMCKSIRVTLDQHLFREECELWPLFGRHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNRMMDTWKQATKNTMFNEWLSECWKESPVSIAQEEASDHSTSPRGAEGRESLGHNDPMFKPGWKDIFRMNQNELESEIRKVYRDSTLDPRRKAYLVQNLLTSRWIAAQQQSPKALSEGSSNSVEIVGLSPSFRDPEKLVFGCDHYKRNCKLRAECCGKLFTCRFCHDNVSDHSMDRKATLEMMCMHCLNIQPIGPMCMTPSCNGFSMAKYYCNICKFFDDERNVYHCPFCNLCRVGQGLGIDYFHCMKCNCCLGIKSTSHKCLEKGLEMNCPICCDDLFTSSATVRALPCGHYMHSACFQAYTCSHYTCPICSKSLGDMAVYFGMLDALLAAEELPEEYRERCQDILCHDCDRKGSSRFHWLYHKCEFCGSYNTRVIKCETSNSSCS 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04099 1196 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 646 1193 - -
Vian1g04099 1196 FunFam Zinc finger protein-related isoform 1 1075 1124 - -
Vian1g04099 1196 ProSiteProfiles Zinc finger CHY-type profile. 944 1013 IPR008913 GO:0008270
Vian1g04099 1196 SUPERFAMILY Zinc hairpin stack 1017 1073 IPR037275 -
Vian1g04099 1196 MobiDBLite consensus disorder prediction 849 863 - -
Vian1g04099 1196 SUPERFAMILY CHY zinc finger-like 946 1007 IPR037274 GO:0008270
Vian1g04099 1196 Pfam Ring finger domain 1079 1121 IPR001841 -
Vian1g04099 1196 CDD Hr-like 298 427 - -
Vian1g04099 1196 CDD Hr-like 605 766 - -
Vian1g04099 1196 ProSiteProfiles Zinc finger RING-type profile. 1080 1122 IPR001841 -
Vian1g04099 1196 MobiDBLite consensus disorder prediction 840 864 - -
Vian1g04099 1196 Pfam Hemerythrin HHE cation binding domain 43 169 IPR012312 -
Vian1g04099 1196 Pfam Hemerythrin HHE cation binding domain 295 429 IPR012312 -
Vian1g04099 1196 Pfam Hemerythrin HHE cation binding domain 603 767 IPR012312 -
Vian1g04099 1196 CDD Hr-like 41 167 - -
Vian1g04099 1196 Gene3D nmb1532 protein domain like 298 445 - -
Vian1g04099 1196 Gene3D nmb1532 protein domain like 36 187 - -
Vian1g04099 1196 Gene3D nmb1532 protein domain like 600 840 - -
Vian1g04099 1196 ProSiteProfiles Zinc finger CTCHY-type profile. 1016 1079 IPR017921 -
Vian1g04099 1196 Gene3D - 1151 1192 - -
Vian1g04099 1196 Pfam CHY zinc finger 951 1026 IPR008913 GO:0008270
Vian1g04099 1196 Pfam Zinc-ribbon 1127 1184 IPR039512 -
Vian1g04099 1196 SMART ring_2 1080 1121 IPR001841 -
Vian1g04099 1196 CDD RING-H2_Pirh2-like 1079 1122 - -
Vian1g04099 1196 SUPERFAMILY RING/U-box 1078 1125 - -
Vian1g04099 1196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1076 1124 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04099 Vian-Chr1 64024027 64033369 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04099 1 1196 C2H2 Transcription Factor Family AT3G18290 65.214 0.0 1650
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04099 K16276 - gmx:100803002 2204.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04099 1 64024027 64033369 Vian1g04099 1 64024027 64033369 ECH