Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04095 ATGGCTTTGAATGCCATCTCTTTCGTTCTTCATGTCTCCAACAAAGCTTTCAAATTTCAAACTCCAAGGCTCTTGCGCTCATTCTCGTATCTGGCCATTGATGTTGAACAAGACCACGAGCATACCCCACGTGAGAAACCCTTCGACGTTGATCCCGATCTTCTCAGTCACATGGTAAGGGACAAGACGCTCGAGTCTCTCACCCAGTTTGGAGGCGTCAAGGAACTCGCTTCACTTCTTGAAACCGATGTAAAGGGTGGCGTAAGCGACAGCAAGGATGATCTTGATCACCGAAGACGTGACACCACTATTATCATCCTTTTGGCTTGTGCTCTGCTTTCTCTTGGCTTTGGGATCAAGCAGCATGGATGGAAGGAGGGCTGGTACGATGGAGGAAGCATCATATTGGCGGTTATTCTCGTCATTGTTGTCTCTTCCGTGAGCAACTTCAATCAATCTAGACAGTTCCAGAAGCTTTCTGCGAAGAGTGAAAACATTGGAGTCGAAGTAGTACGAGGTGGTCGACGCCGAAGCGTGTCAATCTTTGATGTGGTGGTTGGTGACATTGCGTACCTGAAGATCGGTGATCAGGTTCCAGCTGATGGAGTGCTTTTGGAAGGGTATTCGTTGAAGGTGGACGAATCTAGCATGACGGGGGAGAGTGATCACGTTCACGTGAACGCTGACACAAACCCTTTCTTGTTATCTGGCACAAAGATCAGTGATGGTTTTGCATACATGCTTGTCACTTCTGTGGGCGTGAACACTGCCTGGGGTGAAATGATGGGTTCGATAGCGAGAGAGGTTAATGAGGAGACACCTTTGCAAGTGCGTCTTAATAAATTGACTTCTGCTATCGGCAAGGTTGGGCTGTTGGTGGCTGCGCTTGTTTTGGTGGTATCTATGATACGTTACTTCACAGGAAGTACCAGAGATGATTTTGGTAACCGAGAATTCGTTGGGAGGAAGACAAAGTTTGATGATGTTATGAATGCGGTTGTGGGGATTGTTGCTGCGGCTGTGACAATTGTGGTGGTGGCTATTCCAGAAGGGTTGCCTCTGGCTGTTACTTTGACTTTGGCTTATTCCATGAAGAAAATGATGCGGGATAATGCTATGGTTAGGAGAATCTCTGCTTGTGAGACAATGGGGTCAGCAACAACAATCTGCACTGATAAAACTGGTACTCTTACGATGAATGAGATGCAGGTGACTGAGGTTTGGGTGGGAAAAGAGGAAATAGCAGAAGGTGCGTATTTGGCACCGAGTTTAGTACAATTATTGAAAGAAGGAATTGGGTTGAATACCGCAGGAAGCGTTTACCAGACCCAACAAACGTCTCCGCCCGAAATTTCAGGTAGTCCAACTGAGAAAGCATTGCTTTCTTGGGCTGTTGTGGATTTGGGGATGGACATTGATCTTGTGAAGCAGCATTGTGAAATCATTCATGTGGAGACGTTTAATTCTGAGAAAAAGAGAAGTGGGATTTTGATGAGGGAGAAGAGAGGGAGCAACAGGATCGTTACACATTGGAAGGGTGCTGCTGAGATGATATTGGCTATGTGTTCAAGTTATTATGGCCGGTCAGGGGAAATCATGATCTTTAATGGTGAAGAAAGGGTTCAGATTGAGAACATTGTGAAGGGCATGGCTACCAATAGTTTGCGATGCATTGCCTTTGCCCAAAAGAGCTCCAATGGGCAGGTCTGTGAAAAGCTTGAAGAGACAGAACTAACACTGTTGGGAATACTTGGATTGAAAGACCCTTGTAGGCCAGGAGTTGAAGCAGCAGTTGAATCATGTAGGAATGCTGGAGTGAAGATCAAGATGATCACCGGAGATAATGTGCACACAGCGAAGGCCATAGCCTCTGAATGCGGGATTCTTGATCCTAGTGAAGAATTGGATGAAGATGCTGTGGTTGAAGGGTTTCAATTCAGAAATTACTCGCATGAGGAAAGAATGGATAAGATTGACAGAATCAGGGTCATGGCCAGATCATCTCCATTTGACAAGCTTCTGATGGTTCAATGTTTAAAGCAGAAGGGTAATGTGGTGGCAGTCACAGGTGATGGCACAAATGACGCACCTGCTCTAAAAGAAGCAGATATTGGACTTTCCATGGGAATAGAAGGCACTGAAGTGGCAAAGGAGAGCTCAGATATTGTTATCCTTGACGACAATTTCTCTTCTGTGGTTACAGTAATCAGATGGGGAAGATGTGTGTACAAAAACATTCAGAAGTTCATTCAGTTTCAGCTCACAGTTAATGTTGCTGCACTGGTCATAAACTTTGTAGCTGCAGTTTCTTCTGGTAAAGTGCCTCTTACAGCAGTCCAGCTTTTGTGGGTAAACCTGATAATGGATACCCTTGGAGCTTTGGCTTTAGCCACCGAGGAACCTACTGATGATCTCATGAAGATGCCACCTGTAGGTAGAGTTGAGCCACTGATAACTAGAGTTATGTGGAGGAACCTGATTTCACAGGCATTGTACCAGGTTATGGTGTTGCTGGTTTTAGAATTCAGGGGAAGATCAATCTTTGATGTTACTGAGAAGGTGAAGAACACCATTATCTTCAATTCTTTTGTCCTCTGCCAAGTGTTCAATGAGTTCAATGCAAGGGAGCTGGAGAAGAAGAACATATTTAAGGGACTTGGTAAGAATAGGTTGTTCATTGTAATTGTGAGCCTAACTGTTGTTCTTCAGCTAGTGATGGTTGAGTTTCTGAAAAAGTTTGCCAATACTGAGAGATTGACTTGGGAGCAATGGGGTGTTTGTGTTAGCATTGGAGCTTTGTCTTGGCCAATTGGTGTGCTGGTGAAGTGTATCCCAGTTGTTCGCAAGAAGTAG 2853 0.4497 MALNAISFVLHVSNKAFKFQTPRLLRSFSYLAIDVEQDHEHTPREKPFDVDPDLLSHMVRDKTLESLTQFGGVKELASLLETDVKGGVSDSKDDLDHRRRDTTIIILLACALLSLGFGIKQHGWKEGWYDGGSIILAVILVIVVSSVSNFNQSRQFQKLSAKSENIGVEVVRGGRRRSVSIFDVVVGDIAYLKIGDQVPADGVLLEGYSLKVDESSMTGESDHVHVNADTNPFLLSGTKISDGFAYMLVTSVGVNTAWGEMMGSIAREVNEETPLQVRLNKLTSAIGKVGLLVAALVLVVSMIRYFTGSTRDDFGNREFVGRKTKFDDVMNAVVGIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKKMMRDNAMVRRISACETMGSATTICTDKTGTLTMNEMQVTEVWVGKEEIAEGAYLAPSLVQLLKEGIGLNTAGSVYQTQQTSPPEISGSPTEKALLSWAVVDLGMDIDLVKQHCEIIHVETFNSEKKRSGILMREKRGSNRIVTHWKGAAEMILAMCSSYYGRSGEIMIFNGEERVQIENIVKGMATNSLRCIAFAQKSSNGQVCEKLEETELTLLGILGLKDPCRPGVEAAVESCRNAGVKIKMITGDNVHTAKAIASECGILDPSEELDEDAVVEGFQFRNYSHEERMDKIDRIRVMARSSPFDKLLMVQCLKQKGNVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFSSVVTVIRWGRCVYKNIQKFIQFQLTVNVAALVINFVAAVSSGKVPLTAVQLLWVNLIMDTLGALALATEEPTDDLMKMPPVGRVEPLITRVMWRNLISQALYQVMVLLVLEFRGRSIFDVTEKVKNTIIFNSFVLCQVFNEFNARELEKKNIFKGLGKNRLFIVIVSLTVVLQLVMVEFLKKFANTERLTWEQWGVCVSIGALSWPIGVLVKCIPVVRKK 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04095 950 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 396 594 IPR023299 GO:0000166
Vian1g04095 950 PRINTS P-type cation-transporting ATPase superfamily signature 713 725 - -
Vian1g04095 950 PRINTS P-type cation-transporting ATPase superfamily signature 582 593 - -
Vian1g04095 950 PRINTS P-type cation-transporting ATPase superfamily signature 604 614 - -
Vian1g04095 950 PRINTS P-type cation-transporting ATPase superfamily signature 689 708 - -
Vian1g04095 950 PRINTS P-type cation-transporting ATPase superfamily signature 213 227 - -
Vian1g04095 950 PRINTS P-type cation-transporting ATPase superfamily signature 390 404 - -
Vian1g04095 950 PRINTS H+-transporting ATPase (proton pump) signature 543 561 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g04095 950 PRINTS H+-transporting ATPase (proton pump) signature 689 705 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g04095 950 PRINTS H+-transporting ATPase (proton pump) signature 721 746 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g04095 950 NCBIfam calcium-translocating P-type ATPase, PMCA-type 100 946 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vian1g04095 950 FunFam Calcium-transporting ATPase 706 948 - -
Vian1g04095 950 Pfam Cation transporting ATPase, C-terminus 774 943 IPR006068 -
Vian1g04095 950 Gene3D - 387 734 IPR023214 -
Vian1g04095 950 ProSitePatterns E1-E2 ATPases phosphorylation site. 392 398 IPR018303 -
Vian1g04095 950 SUPERFAMILY HAD-like 388 794 IPR036412 -
Vian1g04095 950 Pfam haloacid dehalogenase-like hydrolase 387 703 - -
Vian1g04095 950 SFLD C1.7: P-type atpase like 372 742 - -
Vian1g04095 950 FunFam Calcium-transporting ATPase 143 266 - -
Vian1g04095 950 Pfam E1-E2 ATPase 168 369 - -
Vian1g04095 950 Gene3D - 101 937 - -
Vian1g04095 950 Gene3D - 400 589 IPR023299 GO:0000166
Vian1g04095 950 PANTHER CATION TRANSPORTING ATPASE 44 946 - -
Vian1g04095 950 FunFam Calcium-transporting ATPase 583 734 - -
Vian1g04095 950 SFLD p-type atpase 372 742 IPR044492 -
Vian1g04095 950 Gene3D - 153 266 - -
Vian1g04095 950 FunFam Calcium-transporting ATPase 400 589 - -
Vian1g04095 950 SUPERFAMILY Calcium ATPase, transduction domain A 168 264 IPR008250 -
Vian1g04095 950 SUPERFAMILY Calcium ATPase, transmembrane domain M 71 948 IPR023298 -
Vian1g04095 950 NCBIfam HAD-IC family P-type ATPase 334 416 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vian1g04095 950 NCBIfam HAD-IC family P-type ATPase 660 771 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04095 Vian-Chr1 64000313 64003230 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04095 26 946 Primary Pumps ATPases AT3G22910 64.731 0.0 1170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04095 K01537 - gmx:100784119 1466.44