Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04090 ATGGAAATTCAAAACTTGGTGCCCTTTGACAGCTTATTGGGCTCTACAGAACCTGAATTTCCAGGAAACTTGGAAGAGAATTTTCCGGGTCTTTTTCAATGCGTGGATCACAATGCAGTTCCAGCGTTAAATGAAGTTCATGAAGGTAAAAAGAGGGAAGCAACTGATATGGGTGATCCCAGTTCTGGTAACTCAACTCCTGATATTTCTGAGAGTGGAAGCAAGACAAAAAATATTTGTGGAAGAGGCAAGAGAGTGAAAAGGAATGCGGTAGAAGACAAGAAACCAAACCAAGTAGTTCATGTCAGAGCCAAAAGAGGTCAAGCTACAGATAGTCACAGTTTAGCAGAGAGGGTTAGAAGAGGGAAAATCAATGAAAAACTTAGGTGCTTGCAGAACATTGTCCCAGGATGTTACAAGACCATGGGTATGGCGATAATGTTGGACGAGATCATAAACTATGTGCAGTCCTTGCAGCATCAAGTGGAGTTCCTCTCAATGAAGCTGAGTGCAGCAAGTAGCTATTACGACTTCAATTCAGAGTCAGATGCTTTAGAAACAATGCAGAGAAGAAAGGCATCCGAGGCGAAAGAGATAGGGAAGTATGTGAGAGAAGGAAGTGATGAAGGAGTTTCTTGCTTTGAAGCAACATGGCCATGGTACCTGTAA 669 0.4245 MEIQNLVPFDSLLGSTEPEFPGNLEENFPGLFQCVDHNAVPALNEVHEGKKREATDMGDPSSGNSTPDISESGSKTKNICGRGKRVKRNAVEDKKPNQVVHVRAKRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAIMLDEIINYVQSLQHQVEFLSMKLSAASSYYDFNSESDALETMQRRKASEAKEIGKYVREGSDEGVSCFEATWPWYL 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04090 222 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 108 158 IPR011598 GO:0046983
Vian1g04090 222 SMART finulus 114 164 IPR011598 GO:0046983
Vian1g04090 222 CDD bHLH_AtBPE_like 99 183 - -
Vian1g04090 222 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 106 176 IPR036638 GO:0046983
Vian1g04090 222 Gene3D - 105 177 IPR036638 GO:0046983
Vian1g04090 222 FunFam transcription factor BEE 3-like 105 176 - -
Vian1g04090 222 Pfam Helix-loop-helix DNA-binding domain 112 159 IPR011598 GO:0046983
Vian1g04090 222 MobiDBLite consensus disorder prediction 58 77 - -
Vian1g04090 222 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 59 185 IPR024097 GO:0006355
Vian1g04090 222 MobiDBLite consensus disorder prediction 50 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04090 Vian-Chr1 63969667 63971184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04090 8 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 52.564 5.28e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vian1g04090 HLH 0.00019 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04090 - - vun:114179606 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04090 1 63969667 63971184 Vian1g04090 1 63969667 63971184 ECH