Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04086 ATGGAAGAAAACCTACCTCCTGGGTTCAGGTTCCATCCTACAGATGAAGAACTCATCACATATTATTTATTAAGGAAAGTGTCTGACGTTAGCTTCACATCCAAGGTTGTCGCAGTTGTTGATCTCAATAAATCTGAACCTTGGGACCTCCCAGGTAAGGCTTCGATGGGGGAGAAGGAATGGTATTTCTTCAGCCTGAAAGATCGGAAATATCCGACGGGGCTTCGGACGAACCGAGCGACGGAATCAGGGTATTGGAAAACCACCGGAAAAGATAAGGAGATATTTGGCGGTGGAGTTTTGATAGGGATGAAGAAAACTTTGGTGTTTTATATGGGCAGAGCTCCAAGGGGTGAGAAAAGTAACTGGGAAGAATGGGTGATTTGCAGAGTCTTCCAGAAGAGCTCAGCACCAAAGAAAGCGCAGCAGACATCATCCTCTCAACCATCTCAAGAGTCTCCTACCTCAATGGCGAATGAATTTGGTGATGCAGACCTACCAAATCTGAATAGCATTGCAAATTCATCTAGTGTTGCAGCACAAATTTACAACAGTACTGGTGATCCCAGCAATGTCAGCACAAACATGAACTCGACCATGAATTGGCCTTCTGCAACTGAGCTTCCATCTCTTCCATGGCCTTCTGGGTTGATGCTGAATCCAAACCTTTCTGTCAATTCATTGCTTCTCAGGGCATTGCAGCTTAGGAGTACATATCAACAAAGAGAAGCTGCAACTGGTGATCACTTTGCAACGTACGTTCCTCAAACATTTCCTCACAATAATATTGGAACTGATAATCTCACTCCAAATCTCAGTGTCTCAGCTTCTTCCAGAACTTTAGAACTGCAGGAGCAACCATTCAATATGGACTCCATTTGGTGA 885 0.4429 MEENLPPGFRFHPTDEELITYYLLRKVSDVSFTSKVVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKEIFGGGVLIGMKKTLVFYMGRAPRGEKSNWEEWVICRVFQKSSAPKKAQQTSSSQPSQESPTSMANEFGDADLPNLNSIANSSSVAAQIYNSTGDPSNVSTNMNSTMNWPSATELPSLPWPSGLMLNPNLSVNSLLLRALQLRSTYQQREAATGDHFATYVPQTFPHNNIGTDNLTPNLSVSASSRTLELQEQPFNMDSIW 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04086 294 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 191 - -
Vian1g04086 294 MobiDBLite consensus disorder prediction 138 158 - -
Vian1g04086 294 Pfam No apical meristem (NAM) protein 6 123 IPR003441 GO:0003677|GO:0006355
Vian1g04086 294 Gene3D NAC domain 14 138 IPR036093 GO:0003677|GO:0006355
Vian1g04086 294 MobiDBLite consensus disorder prediction 138 166 - -
Vian1g04086 294 ProSiteProfiles NAC domain profile. 5 152 IPR003441 GO:0003677|GO:0006355
Vian1g04086 294 SUPERFAMILY NAC domain 3 134 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04086 Vian-Chr1 63933066 63935391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04086 1 294 NAC Transcription Factor Family AT3G18400 52.870 6.94e-104 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vian1g04086 NAM 1.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04086 - - gmx:100775645 447.203