Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04082 ATGAGAGACATGAAAGATGCAGGTGCCTTGGGAGCCAAGACAGCACGAGCCTGCGATAGTTGCATAAGCAGAAGAGCAAGGTGGTTCTGTGCGGCTGATAATGCTTTTCTCTGCCATGGCTGCGACACCTTGGTTCATTCCGCCAACCAGTTAGCTAGCAGGCACGAAAGGGTTCGGCTTCAAACTGCATCCTCTAAGGTAACCACCACCACCACGCACGCATGGCACAGTGGATTCACACGCAAGGCAAGAACCCCACGTCACAACAACAACAAACACTTTGCACTGCAACAACGTCTCAAAGAAGAAGTTCTCTTCAACAACAGCAGTGTTCTTCCCCTGGTTCCGGAGCTGGGAAGGGAAGAACAAGAACCTGTGGTTGTGGATAATGACGAGACGGAGGAACAGATGCTATGTCGCGTGCCCGTGTTCGACAATTATGATGTGAGAACAGATGACTTGGACAGTTTTTCCGACATGGATTTCGCGGAGTTTGCTGCTGATGTTGAAAACCTACTTGATAAAGAAGACGATGAAATAAGTGAGCGTGTGGGAGGGGGAGTTCAGGGTGCAATGGCGAAGGTTAAGGATGAAGAGGACGTTGATGGTGATGTAGCGTGTTATCTGGAGTCAGTTTTTGACATGACGAACGATGATGCCTTTCATTGGAATAGCATTGAGTCCGTGTTGTCAGATACACGGGAAAAGGAGTGTGTGGTGGCGAGTGACGGTGCTGTTGGTGAAGAAGGAGGAACAAAGAGAGACATATTTTTGAGACTGAACTACGATGAGGTTATAACCGCATGGTCTAGCCAAGGTTCTTCTCCCTGGACAACTTCAAACCCACCTAAGTTCAACTCTGGCTATGACTTCTGCTTGGGTCTGAGTGGTGTAGATGGGGACGTAAGAGCCTTAAGGGGTGACCTAGACGGAGGAAGAGAGGCAAGAGTGTCGAGGTACAGAGAGAAGAGAAGGACTCGTTTGTTTGCAAAGAAAATAAGATATGAAGTGAGAAAGTTGAACGCAGAAAAAAGGCCCAGAATGAAAGGTCGTTTTGTGAAGAGAACATGCTTTGTGGGGGCGAATGCTTTTCCTGCTTACCAATGA 1107 0.4815 MRDMKDAGALGAKTARACDSCISRRARWFCAADNAFLCHGCDTLVHSANQLASRHERVRLQTASSKVTTTTTHAWHSGFTRKARTPRHNNNKHFALQQRLKEEVLFNNSSVLPLVPELGREEQEPVVVDNDETEEQMLCRVPVFDNYDVRTDDLDSFSDMDFAEFAADVENLLDKEDDEISERVGGGVQGAMAKVKDEEDVDGDVACYLESVFDMTNDDAFHWNSIESVLSDTREKECVVASDGAVGEEGGTKRDIFLRLNYDEVITAWSSQGSSPWTTSNPPKFNSGYDFCLGLSGVDGDVRALRGDLDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPAYQ 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04082 368 Pfam CCT motif 313 355 IPR010402 GO:0005515
Vian1g04082 368 SMART bboxneu5 13 60 IPR000315 GO:0008270
Vian1g04082 368 ProSiteProfiles CCT domain profile. 313 355 IPR010402 GO:0005515
Vian1g04082 368 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Vian1g04082 368 CDD Bbox1_BBX-like 17 60 - -
Vian1g04082 368 Pfam B-box zinc finger 15 58 IPR000315 GO:0008270
Vian1g04082 368 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 9 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04082 Vian-Chr1 63900521 63901891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04082 7 355 C2C2-CO-like Transcription Factor Family AT1G25440 44.028 4.02e-85 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Vian1g04082 zf-B_box 5.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04082 - - vun:114176987 704.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04082 1 63900521 63901891 Vian8g01485 8 34305099 34307391 PCT