Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04066 ATGGATTTAGAAGAGAAGTTCCTGGTTAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGTACTCCAGAAAAAAATGGCCATTCAGATGGTGCTTCAAAAAGTTCAGAACTCCTTCAACAGTTCCTAAAATGTGGTCTGAAGAAGGAACTTCTTCGAACGTCTTTTGATAAGGACAAAAAAAACATTTCAATTAAAAGCAGGATGACTGAAACTAAGTCAACTGGGAAGATGATTAAGAAACAAGACACAAAAAAGGTTTCTAGTTTCAGCCACCAGCCATCTAGAAAGCAGTCTCGGAAGGGTGAAAATCCCACTCGACTCATACCTCCTTCTGACCAGTCTTCTGATTTTGGCCATTCAAACACTTGGGTCTGTAAAAATGCTGCTTGTAGGGCAGTTCTGTCTATAGATGACACATTCTGTAGAAGATGCTCTTGCTGTATTTGTCACCTTTTTGATGATAACAAGGATCCTAGTCTTTGGTTGGTATGCACATCTGAGTCTACTCAAGGGGACTCCTGTGGGTTGTCTTGCCATATTGAATGCGCCCTTCTACATAAGAAGGTGGGGGTTGTTGATCATGGGCAACTGATGCAACTAGATGGTGGTTATTGTTGTGCATCCTGTGGTAAAGTTACGGGAATACTCGGATGTTGGAAGAAGCAGCTAAATATTGCTAAGGATGCCCGACGTGTGGATGTACTCTGTTACAGGATATATTTGAGCTACAGGCTTCTGGATGGAACCACAAAATTCAAAGACTTGCATCAAACAGTACAAGAGGCGAAGGCTAAGCTGGAGACAGAAGTTGGCCCTGTGAATGGCGTTTCTGCCAAGATGGCTCGAGGCATTGTCAGCAGACTCCCTATTGCCAATGATATACAGAAACTCTGTTCACTTGCTATTGAGAAAGCTGATAGCTGGCTTGCCACTGTTCACAATGTAAATTCAGATTCTACAGGGGGTTCACTTCCTGCTGCTTGCAAGTTTGTTTTTGAAGAGGTAACAACTTCCTCCGTGAAAATCATTTTAATTGAATTATCAAATATATGTTCTGAGGAGATTAAGGGATACAAGCTTTGGTATTACACGAGTCGGGATGAATCACCCACCAAAGATCCTGTTTCCGTGTTTCCCAAAACTCAGAGGAGGATTTTGATATCCAACCTCAAGCCTTGCACAGAATATACTTTTCGGATTATATCTTACACAGATACATGTGACCTGGGTCATTCTGAGGCTAAGTGTTTTACCAAGAGCATCGAGGTAATTAAAAACAACCCCTCTCCATCTGTCGCTATGAATCATGAAAAAGAGAACCTTCTATCTAGGGGCAATTCTTCGGGATCCAAGATGGTGCCAAATGACGCAATGGGCAACTATGGATTCAAGGTTCGAGACCTTGGGAAAATTTTGCGTCTTGCTTGGGCTCAAGAACAAGGTTACTTGGAAGAGTTTTGTTGTGCCAATACGAAAAATTGCTGTGGTCAGAGTGAACGGTTAGATAAACCAAGAATTCCAGAGGCACAGTTGCCCTCAGTTTCTAGAGGCCTTGATTTGAATGTTGTTTCAGTTCCTGATTTAAATGAAGAGCTAACACCTCCTTTTGAGTATTCTAGGGATGAAGATAATGGTTGCTCTTTGTTGCAAACTGTGGAGGGGGACGATGATGCAGCTTCTCATGATCTAGAGAAAAATGGTTTAGCAAGATCACATGGGAGTGGGGATTCTCAAACCTGGACCCATGGGCCAACAGGAGAAGTATCTGCTGTTGATTCACGCTTAGATATGTGCAGAAAAAGGTTAGCAAGCACAATGGAAGAGACACATGATTGTGACAGCACTTTAATTAACGGTTCTCCATCACGCATATGTGATGGTTCATGTTCCTTGGATGAGAACTTTGAGTATTGTGTGAAAGTAATTCGTTGGCTAGAATGTGAGGGTCACATTAAACAGGAATTTAGGTTGAAGTTGCTAACATGGTTTAGTTTAAGGGCGACAGAGCAAGAACGCAGGGTGGTTAATACCTTCATTCAGACTCTTATGGATGATCCGAGTAGTTTGGCAGGGCAACTGGTAGATTCTTTTTCTGATATTATATCAAACAAGAGGCAAAAAAATGGATTCAGTATTAAAGCCGGGACATCAAATTAA 2166 0.4178 MDLEEKFLVKVSGVQSLSSSVQSTPEKNGHSDGASKSSELLQQFLKCGLKKELLRTSFDKDKKNISIKSRMTETKSTGKMIKKQDTKKVSSFSHQPSRKQSRKGENPTRLIPPSDQSSDFGHSNTWVCKNAACRAVLSIDDTFCRRCSCCICHLFDDNKDPSLWLVCTSESTQGDSCGLSCHIECALLHKKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLDGTTKFKDLHQTVQEAKAKLETEVGPVNGVSAKMARGIVSRLPIANDIQKLCSLAIEKADSWLATVHNVNSDSTGGSLPAACKFVFEEVTTSSVKIILIELSNICSEEIKGYKLWYYTSRDESPTKDPVSVFPKTQRRILISNLKPCTEYTFRIISYTDTCDLGHSEAKCFTKSIEVIKNNPSPSVAMNHEKENLLSRGNSSGSKMVPNDAMGNYGFKVRDLGKILRLAWAQEQGYLEEFCCANTKNCCGQSERLDKPRIPEAQLPSVSRGLDLNVVSVPDLNEELTPPFEYSRDEDNGCSLLQTVEGDDDAASHDLEKNGLARSHGSGDSQTWTHGPTGEVSAVDSRLDMCRKRLASTMEETHDCDSTLINGSPSRICDGSCSLDENFEYCVKVIRWLECEGHIKQEFRLKLLTWFSLRATEQERRVVNTFIQTLMDDPSSLAGQLVDSFSDIISNKRQKNGFSIKAGTSN 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04066 721 Gene3D Immunoglobulins 313 417 IPR013783 -
Vian1g04066 721 MobiDBLite consensus disorder prediction 574 589 - -
Vian1g04066 721 Pfam PHD - plant homeodomain finger protein 128 246 IPR032881 -
Vian1g04066 721 MobiDBLite consensus disorder prediction 69 89 - -
Vian1g04066 721 MobiDBLite consensus disorder prediction 69 121 - -
Vian1g04066 721 CDD FN3 357 408 IPR003961 GO:0005515
Vian1g04066 721 MobiDBLite consensus disorder prediction 569 589 - -
Vian1g04066 721 MobiDBLite consensus disorder prediction 12 37 - -
Vian1g04066 721 Pfam Fibronectin type III domain 333 409 IPR003961 GO:0005515
Vian1g04066 721 PANTHER VIN3-LIKE PROTEIN 2-RELATED 17 716 IPR044514 GO:0010048|GO:0040029
Vian1g04066 721 SUPERFAMILY Fibronectin type III 332 408 IPR036116 GO:0005515
Vian1g04066 721 ProSiteProfiles Fibronectin type-III domain profile. 327 426 IPR003961 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04066 Vian-Chr1 63723135 63730169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04066 124 712 PHD Gene Family AT3G24440 48.515 1.16e-177 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04066 - - gmx:100816128 1322.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04066 1 63723135 63730169 Vian1g04066 1 63723135 63730169 ECH
Vian1g04066 1 63723135 63730169 Vian8g01517 8 34663618 34670850 PCT