Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04063 ATGGCTAGTCGACTGAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTTAAACTCACGCCGAATCGGAGATGTATTAACTGTAACAGTCTGGGACCACAATATGTGTGCACGAATTTCTGGACCTTTGTATGCACTAACTGTAGCGGAATCCACCGAGAATTTACACATCGGGTGAAATCAATTTCAATGGCCAAATTTACTGCACAAGAAGTTAGTGCACTTCAAGAAGGTGGAAATCAGCGTGCAAAAGAAATCTATTTTAAGGAATGGGACCCACAACGTCATTCTTTTCCTGATAGCAGCCATGTTGACAGGCTCCGGGATTTCATCAAGCATGTTTATGTCGATAGAAGATTCAGCAGTGAGAAGACCAATGATAAACCTCCAAGAGTAAAGGGTGACAAGGATGATTTCTATGAAAACAAGAAGACAGAGATGTATCAGGGTGGACCGAAAAGCCCTCCATATGAGGGTCGTTACAGCGATAGGTCTAGTCCTGGTGGAAGAAGTCCTGGATATGATCAAGAAAATAGGCAATATGGTGATTACAAGATAAGTCCTAGTCGTCCTCCTATAATCAATGACTGGCATGGAGAAGAAAGATTTGGGGATCGACGAAAATATGATGATCAGAGAATATCTGATGGAAATCACAAGGGGGAAAGCCATTCTCCTGATCATACCAAGGATCCAGATTCTTCCAGCCCCCCTGTGGTCCGACCTGTTAGAGAAATCTTGGGAGAAAATGTAGTACCTCTTCGAATAAGTGAACCACCCAAAACAAACGGTGTACAGGCTGCTAATGGCTCAACACTCGCACAGAGGACTTCATCTTCCAGTACCTTAGCATCCAGCCATGTAACCCGGACAGAAGTTAAGCCTGAGACTATTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCATCTGTTACTCCAGCAATTACTCAAGCCCAACAAACTACTGTTGCTGAACTTGGGATGCCTGCAAATTCCAATGATAATAATTGGGCCTCTTTTGATTTTTCTCCTGAGGCAAAAGCACCTCAAGGTCCTTCAATCGTAAATCCACTTGAATCTGTGCTGATACAATTGACAGTACCAGTATCTTTACCTTCTCAGGTTTCCCGAGCCCAAGGACCTTTGACTGGATCAACTCTTACTGCTACTGCTGCTGGAGGTACAATTGCTAGCAGCTTCTCAACATTCCCACCTACTAGTAGTGCTTCAGTAACATCTTTTGAAGTGATAGCAACATCAACTTTCAATAATGCAGGACAGTGGGCTAGTTTGCAGAATCAGCAACAACAACCTTTGTTCACTGCTGCGGCAAGTCAGCCTTCTATTCAACGAGCCACACCACCAGTTGGTGCAGCTTTGAATAATCAGCCCTGGACCGTACCATCAGTACAAAGGCATCCAAGCACATCAATACCCCATGCATCACACCTTGTCCCAAAGCCTGCCAATGAGGCTATGTCCAGTGTTGTTTTACAAACTTCTGCAGTTGACATCAAACCAAGTGGAAGAAGTGAGCTTCCGGAGGATCTATTCACGGTAAATTATCCATCCTTCCCTGCTCCAGTCCCAGGTTGGCAAACGGGTCTACCACATAGTATGGGTATCCCAATTCAATACAATAATGCAGTGCCCATGCCAAGTTTTCCACAAGCATCAAAGTCAATAAATCCATTCGATGCCAGTAACGAACCTACTCCAGTTCAAGTCCCAACATTTCCTTCTATGTCATCTCTGCAAAGTGCTCTGCCTAGTGTAACGCCTTCAGCTAAAATCCACCCTTCAAATATGGGAAATCCATCTTTTGCCTGGAATCCGTCATCATCATATGCATTAGTGCCGCCTCCTCAAGCACAAACTATTGCACCCGTAATGGGACCAGGGGCATACATGGGAATACATGTTAACAATCCGCAGATGGTCACTAACATGCCAATGCCGAGGCATCAAGGATTTGGGAGGTTGGCGACCGAGGGAACTGCTTTTGGCTTCTCAAATCCAGATCAGAAGCTGAGTAGTAGTAGGTTGTCAACTGCTGTTACCCCAAACACCTTTCAGGCAGGAGGAAATCCTTTCGGATGA 2109 0.4452 MASRLKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTAQEVSALQEGGNQRAKEIYFKEWDPQRHSFPDSSHVDRLRDFIKHVYVDRRFSSEKTNDKPPRVKGDKDDFYENKKTEMYQGGPKSPPYEGRYSDRSSPGGRSPGYDQENRQYGDYKISPSRPPIINDWHGEERFGDRRKYDDQRISDGNHKGESHSPDHTKDPDSSSPPVVRPVREILGENVVPLRISEPPKTNGVQAANGSTLAQRTSSSSTLASSHVTRTEVKPETIKSLIDFDDDPEPSVTPAITQAQQTTVAELGMPANSNDNNWASFDFSPEAKAPQGPSIVNPLESVLIQLTVPVSLPSQVSRAQGPLTGSTLTATAAGGTIASSFSTFPPTSSASVTSFEVIATSTFNNAGQWASLQNQQQQPLFTAAASQPSIQRATPPVGAALNNQPWTVPSVQRHPSTSIPHASHLVPKPANEAMSSVVLQTSAVDIKPSGRSELPEDLFTVNYPSFPAPVPGWQTGLPHSMGIPIQYNNAVPMPSFPQASKSINPFDASNEPTPVQVPTFPSMSSLQSALPSVTPSAKIHPSNMGNPSFAWNPSSSYALVPPPQAQTIAPVMGPGAYMGIHVNNPQMVTNMPMPRHQGFGRLATEGTAFGFSNPDQKLSSSRLSTAVTPNTFQAGGNPFG 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04063 702 CDD ArfGap_AGFG 12 124 - -
Vian1g04063 702 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 135 - -
Vian1g04063 702 MobiDBLite consensus disorder prediction 197 233 - -
Vian1g04063 702 Pfam Putative GTPase activating protein for Arf 13 125 IPR001164 GO:0005096
Vian1g04063 702 Gene3D Arf GTPase activating protein 2 133 IPR038508 -
Vian1g04063 702 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vian1g04063 702 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vian1g04063 702 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vian1g04063 702 PANTHER ARFGAP/RECO-RELATED 1 702 IPR044820 GO:0005096
Vian1g04063 702 SMART arf_gap_3 12 131 IPR001164 GO:0005096
Vian1g04063 702 MobiDBLite consensus disorder prediction 123 146 - -
Vian1g04063 702 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 131 IPR001164 GO:0005096
Vian1g04063 702 SUPERFAMILY ArfGap/RecO-like zinc finger 11 123 IPR037278 -
Vian1g04063 702 MobiDBLite consensus disorder prediction 123 296 - -
Vian1g04063 702 MobiDBLite consensus disorder prediction 264 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04063 Vian-Chr1 63688542 63694605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04063 12 122 C2H2 Transcription Factor Family AT4G21160 34.188 4.31e-13 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04063 - - pvu:PHAVU_002G314500g 1162.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04063 1 63688542 63694605 Vian1g04063 1 63688542 63694605 ECH