LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vian1g04062	ATGGCTAGTCGACTGAAGGAAGATGAGAAAAATGAACGAATAATTCGAGGTCTTCTCAAACTCACGCCGAATCGGAGATGTATTAACTGTAACAGTTTGGGACCACAATATGTGTGCACAAATTTCTGGACGTTTGTATGCACTAACTGTAGCGGAATACACCGAGAATTTACACATCGAGTAAAATCAATATCAATGGCCAAATTTACTGCACTAGAAGTTAGTGCACTTCAGGAAGGTGGAAATCAGCGTGCAAAAGAAATATATTTTAAAGAATGGGATCCACAACGTCATTCTTTGCCTGATAGCAGCAATGTTGGCAGGCTCCGGGATTTCATCAAGCATGTTTATGTGGATAGAAGATTCAGTGGTGAAAAGACCACTGATAAACCTCCAAGAGCCAAGGGTGACAAGGATGATTTCTATGAAAACAAGAGGACAGAGATGTATCAAGGAGGACCTAAAAGCCCTCCTTATGAGGATCGTTACAGTGACAGGTCTAGTCCTGGTGGAAGAAGTCCAGGATATGATCAAGAAAATAGGCAATATGGTGGTGATTACAAGATAAGTCCTGGTCGTCCTCCTATAATCAATGATTGGCGTCGAGAAGAAAGATTTGGAGATGGACGGAAATATGAAGATAATAAAATATCCGATGGAAATCATAAGTTGGAAGGCCATTCTCCTGATCGAACCAAGGATTCAGGTTCTTCCAGCCCACCCATTGTCCGACCTGTTAGAGAGATCTTGGGAGAAAATGTAGTACCTCTTCGAATAAGTGAACCGCCCAAAACAAACAGTGGTCTGGCTGCTAATGGCTCAACACTCACGCAGAGAACTGCATCTTCCAGTAGCTTAGCATCCAGCCATGGAACCCCAGTAGAAGTTAAGCCCGAGACTCTGAAGAGCCTTATTGATTTTGATGATGATCCTGAACCATCTGTTGCTCCAGCAATTCCTCAAGCCCATCAAACTGCTGTGGCTGAACTTGGGATGCCTGCAAATTCCAATGATAACAATTGGGCATCTTTTGATTTTGCTCCTGAGGAAAAAACACCTCATGGTCCTTCAAACGTTAATCCACTTGAATCTATGCTTACTCAATTGACAGGACCCGTATCTTTACCTTCTCAAGTTTCCCAAGCCCAAGGATCTGTGACGGGATCAACTCTTGCTGCTACTGCTGCTGGAGGTACAATTGCTAGCGGCTTCTCAACATTCCCACACAGTGGTGCTTCAGTAACATCTTCCGGATTGATGACAGCATCGACTCTGAATAATGCTGGACAGTGGGCTAGTTTGCAGTATCAGCAACAGCAACCTTTGTTTACCGCAGCTGCTAGTCAGCCTTCTATTCAACAAGCTACACCACCAGTCGGTGGAGCTTTGAATAATCAGCCCTGGACTATACCCTCGGTACCATCAGTACAAGGGCATCCAAACACATCAATGCCCCATCCGTCGCACCTTGTCCCAAAGTCTGCCAATGAGGCTAAATCCAGTGTTGTTTTACAATCCTCTACAGTAGATATGAAGCCAAGTGGAAGAAGTGAACTTCCGGAGGATCTATTCACAGTTAAATATTCATCCTTCCCTGCTCCAGTCCCAGGTTGGCAAATGGGTCTACCACCTAGCATGGGTATTTCAATCCCATACAATAATGCGGTGCCCATTCCAAGTTTTCCACAAGCATCAAAATCAAAAAATCCATTTGATGTCCATAACGAACCTACTCCAGTTCAAGCCCCAACATTTCCTTCCATGTCATCTCTGCAAGGTGCTCTGCCAATACCTTCAGCTACAATGCACTCTTCAAACATGGGTAATCCATCTCTTGCCTGGAATCCGTCCTCATCATCATATGCATCAGTGCCGCCTCCTCAAGCACAAACCCTTGCACCCGCAATGGGACCAGGGGCATACATGGGACAACAAATGGTCTCTAACATGCCAATGCCAAGGCATCAAGGATTTGGGAATTTTACTACTGAGGGAACTGCTTTTGGCTTCTCAAATTCAGATCAGCAGCTGAGTGGTAGTAGGTTATCAACTGCTGTTACCCCAAACAACTTCCAGGCAGGAGGAAACCCTTTCGGATGA	2100	0.4481	MASRLKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFVCTNCSGIHREFTHRVKSISMAKFTALEVSALQEGGNQRAKEIYFKEWDPQRHSLPDSSNVGRLRDFIKHVYVDRRFSGEKTTDKPPRAKGDKDDFYENKRTEMYQGGPKSPPYEDRYSDRSSPGGRSPGYDQENRQYGGDYKISPGRPPIINDWRREERFGDGRKYEDNKISDGNHKLEGHSPDRTKDSGSSSPPIVRPVREILGENVVPLRISEPPKTNSGLAANGSTLTQRTASSSSLASSHGTPVEVKPETLKSLIDFDDDPEPSVAPAIPQAHQTAVAELGMPANSNDNNWASFDFAPEEKTPHGPSNVNPLESMLTQLTGPVSLPSQVSQAQGSVTGSTLAATAAGGTIASGFSTFPHSGASVTSSGLMTASTLNNAGQWASLQYQQQQPLFTAAASQPSIQQATPPVGGALNNQPWTIPSVPSVQGHPNTSMPHPSHLVPKSANEAKSSVVLQSSTVDMKPSGRSELPEDLFTVKYSSFPAPVPGWQMGLPPSMGISIPYNNAVPIPSFPQASKSKNPFDVHNEPTPVQAPTFPSMSSLQGALPIPSATMHSSNMGNPSLAWNPSSSSYASVPPPQAQTLAPAMGPGAYMGQQMVSNMPMPRHQGFGNFTTEGTAFGFSNSDQQLSGSRLSTAVTPNNFQAGGNPFG	699

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vian1g04062	699	MobiDBLite	consensus disorder prediction	616	637	-	-
	Vian1g04062	699	Pfam	Putative GTPase activating protein for Arf	13	123	IPR001164	GO:0005096
	Vian1g04062	699	Gene3D	Arf GTPase activating protein	2	132	IPR038508	-
	Vian1g04062	699	MobiDBLite	consensus disorder prediction	257	295	-	-
	Vian1g04062	699	MobiDBLite	consensus disorder prediction	123	244	-	-
	Vian1g04062	699	SMART	arf_gap_3	12	130	IPR001164	GO:0005096
	Vian1g04062	699	MobiDBLite	consensus disorder prediction	265	291	-	-
	Vian1g04062	699	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	12	130	IPR001164	GO:0005096
	Vian1g04062	699	PRINTS	HIV Rev interacting protein signature	61	82	IPR001164	GO:0005096
	Vian1g04062	699	PRINTS	HIV Rev interacting protein signature	24	43	IPR001164	GO:0005096
	Vian1g04062	699	PRINTS	HIV Rev interacting protein signature	43	60	IPR001164	GO:0005096
	Vian1g04062	699	SUPERFAMILY	ArfGap/RecO-like zinc finger	11	123	IPR037278	-
	Vian1g04062	699	MobiDBLite	consensus disorder prediction	123	146	-	-
	Vian1g04062	699	CDD	ArfGap_AGFG	12	122	-	-
	Vian1g04062	699	MobiDBLite	consensus disorder prediction	339	361	-	-
	Vian1g04062	699	FunFam	Arf-GAP domain and FG repeat-containing protein 1	1	135	-	-
	Vian1g04062	699	MobiDBLite	consensus disorder prediction	574	603	-	-
	Vian1g04062	699	MobiDBLite	consensus disorder prediction	197	232	-	-
	Vian1g04062	699	PANTHER	ARFGAP/RECO-RELATED	1	699	IPR044820	GO:0005096

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vian1g04062	Vian-Chr1	63679374	63685526	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vian1g04062	12	122	C2H2 Transcription Factor Family	AT4G21160	33.333	2.74e-11	63.9

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vian1g04062	-		-	pvu:PHAVU_002G314500g	1154.43