Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04060 ATGAAGAAGAAACAAGGACACTCCTTTAATCTCAGACTCCTCCTCGTTGGCTTCTTTCTGGCCACATGTGCCAATGCCTCCCCTCTCACGCCAACTCAATCGCGCCATCTTCTGTACTACAGAGACGAGTTTGGAGACAGAGGGGAGAATGTCACCGTAGACCCTTCCCTTGCTTTCGAAAATGACCGTCTCAGAAACGCTTACATAGCTCTGCAAGCTTGGAAGCTGGCCATTTTATCTGATCCCCGCAACCAGACAACCGACTGGGTAGGATCCGACGTTTGTAGCTACACCGGTGTATACTGTGCACAAGCGCTCGACAACCCCTCCGTCCGTACAGTCGCCGGCATTGATCTCAACCATCAGGACATTGCCGGCTATTTACCGGAGGAGCTCGGTTTGCTCGTAGATCTTGCACTCTTCCACATCAACTCCAACAGATTCTGCGGCACTGTGCCCCACACGTTCCGGAAGTTGGTACTCCTCTACGAGCTGGATCTCAGTAACAACCGCTTTGCGGGGAGGTTCCCCGAGGTGGTTCTGCGCCTTCCTTCGCTCAAGTTCTTGGATCTTAGGTTCAACGAATTCGAAGGAGCTGTGCCCCGGGAATTGTTCGACAAAGATCTCGACGCCATTTTCATCAACGACAACCGTTTCGTCTTTGACCTTCCAGACAACTTCGGCAACTCCCCCGTCTCCGTCATCGTCCTCGCCAACAACAGATTCCACGGCTGCATTCCCCACAGCCTCGGCAACATGTCCAACCTCAACGAGATCATTCTCATGAACAACGCATTCCGATCCTGCTTGCCCTCCGAGATAGGCTTGTTGAAGAATCTCACGGTGTTCGACGTCAGCTTTAACCAACTTCTCGGCCCCTTACCAAGCGCCGTTGGAAATGCCGTCAGCTTGGAGCAGCTCAACGTGGCCCACAACTTACTCTCCGGTCAAATTCCTCCCAGTATATGTATGTTGCCTCACCTTCTCAACTTCACTTACTCCTTTAACTTCTTCACCGGCGAGCCTCCTGCCTGTCTCGCCTTGCCGGCGTTTGACGATAGGATCAACTGCTTGCCGGCGAGGCCCGTTCAGAGGCCTCCGGCGCAATGTCAGGCTTTCTTGTCTAAGCCTGTGGACTGTAACTCCTTTAACTGCAAGCCATTTGTTCCTTCACCACTTTCCCCCACAACACCTGCAACTCCTTCACCACCATCTCCTGGGACACCTTCGCCTCCATCACCTGGGACACCTTCACCAGTAACTCCTTCGCCTCCATCACCAGGGACACCTTCACCACCATCTTCTGGGACACCACCTGTAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCAGGAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCAGGAACTCCTTCGCCTCCATCACCTGGGACACCTTTACCTGTAACTCCTTCGCCACCATCTCCTGGGTCACCCTCACCCGTAACTCCTTCGCCTCCATCACCTGGGACACCTTCACCCGTAAATCCTTCGCCGTTACCTTCACCTACAACACCTTCGCCTCCTTCACCTGCCGCACCTTCCCCATTACCTTCACCTACGACACCTTCACCACTACCTACACCTCCTTCGGAACCACCGGTGGTGGGACATTCCCCTCCACCCCGGCCAGTGGCACCTTCTCCACTACCACCAATTCACACTCCTCCTTCACCGGTGTATTTGCCACCACCACATTCTTCCCCTGCTCCACCTGGCTACTCTTCACAACCTCCTCCACCTTCGCAATTGCCGCCTCCATCATACACTCCGCCTTCTCCAGTGACACCTTTTCCTACTCCAACGCCACCCAATGGTGTCCACTCTCCACCGCCACCGGCTCCTACATTCTCGACACCACCACCTTCACATAATTATGGCTCATCGCCACCTCCTACACCTCATCACTCACCATCGCCTCATCCTTACCCTTATTTATCACCCCCACCACCTCCTTATCCTGTTCGTGTCCCACCTCCACCACCACCTTGTACAGAACTTCTTCCACCCCCTCCGCAATCAACACCTTCTCCCACACCTTACCTCCCACCACCATCTCCATCTCACCCACCTTATCACCCGCCACCATCCCCTTCTCCCTCTCCAACTCCACCGGTTCAATACAGTTCGCCTCCCCCGCCGCCTCCTCCACCGGCAGTTTCTCCACCGCCACCTGTTGTATACCAAAACCCACCACCTGCCCCTGTATATGAAGGGCCATTGCCACCCATAGTGGGACTCCCATACGCATCGCCTCCGCCTCCACCCTTTTATTGA 2307 0.5488 MKKKQGHSFNLRLLLVGFFLATCANASPLTPTQSRHLLYYRDEFGDRGENVTVDPSLAFENDRLRNAYIALQAWKLAILSDPRNQTTDWVGSDVCSYTGVYCAQALDNPSVRTVAGIDLNHQDIAGYLPEELGLLVDLALFHINSNRFCGTVPHTFRKLVLLYELDLSNNRFAGRFPEVVLRLPSLKFLDLRFNEFEGAVPRELFDKDLDAIFINDNRFVFDLPDNFGNSPVSVIVLANNRFHGCIPHSLGNMSNLNEIILMNNAFRSCLPSEIGLLKNLTVFDVSFNQLLGPLPSAVGNAVSLEQLNVAHNLLSGQIPPSICMLPHLLNFTYSFNFFTGEPPACLALPAFDDRINCLPARPVQRPPAQCQAFLSKPVDCNSFNCKPFVPSPLSPTTPATPSPPSPGTPSPPSPGTPSPVTPSPPSPGTPSPPSSGTPPVTPSPPSPGTPSPGTPSPPSPGTPSPGTPSPPSPGTPLPVTPSPPSPGSPSPVTPSPPSPGTPSPVNPSPLPSPTTPSPPSPAAPSPLPSPTTPSPLPTPPSEPPVVGHSPPPRPVAPSPLPPIHTPPSPVYLPPPHSSPAPPGYSSQPPPPSQLPPPSYTPPSPVTPFPTPTPPNGVHSPPPPAPTFSTPPPSHNYGSSPPPTPHHSPSPHPYPYLSPPPPPYPVRVPPPPPPCTELLPPPPQSTPSPTPYLPPPSPSHPPYHPPPSPSPSPTPPVQYSSPPPPPPPPAVSPPPPVVYQNPPPAPVYEGPLPPIVGLPYASPPPPPFY 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04060 768 FunFam Leucine-rich repeat extensin-like protein 1 68 229 - -
Vian1g04060 768 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 33 518 - -
Vian1g04060 768 MobiDBLite consensus disorder prediction 392 755 - -
Vian1g04060 768 SUPERFAMILY L domain-like 77 349 - -
Vian1g04060 768 FunFam Leucine-rich repeat extensin-like protein 5 230 369 - -
Vian1g04060 768 Pfam Leucine rich repeat N-terminal domain 70 102 IPR013210 -
Vian1g04060 768 Gene3D Ribonuclease Inhibitor 67 352 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04060 Vian-Chr1 63641211 63643517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04060 1 385 Trihelix Transcription Factor Family AT4G18670 71.000 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04060 - - vum:124830001 795.038
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04060 1 63641211 63643517 Vian1g04060 1 63641211 63643517 ECH