Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04059 ATGAGTGCTCTCTCTGTTTCCAGTGACACCCACAACAACTCCTTCCTCAAGATGCCCACCATCAAGTTTACCAAGCTCTTCATCAATGGAAATTTTATTGATTCCATATCAGAACAGGAGAGGGCAAAGATAATGATGAAATGGGCCGACCTAATTGAAGAAAACATAGAAGAAGTAGCAGCATTAGATACCATGGATGCTGGAAAGTTGTATTATTCCAACAAGTTTGGAGAAATTCCAGCAGCAGCAAATCTTCTACGTTACTATGCAGGAGCTGCTGATAAAATTCACGGCGAAGTACTAAAAGTGAACGGAAATTTCCATGCATATACACTGATGGAACCGATTGGTGTTGTGGGACACATAATTCCCTGGAATGCACCCAGTCACTCATTTTTCATCAAGGTTAGCCCTTCCTTAGCAGCAGGCTGCACCATGGTCCTCAAGCCTGCCGAACAAACACCTCTCTCTGCTTTGTTCTATGCTCATCTTGCTAAGCTCGTACGTTTGTCCCTTTTAAAGGCTGGAATCCCAGATGGAGTGCTGAATGTAGTACCCGGATTTGGCCCAACTGCTGGTGCAGCAATAAGCTCGCACATGGAAATTGATGCGGTCAGTTTTACTGGTTCAGTTGAAGTAGGGCGTGAAGTGATGCAAGCTGCTGCTAGGAGCAATTTAAAACCAGTTTCACTTGAATTAGGAGGCAAGTCTCCTCTCATTATTTTCGATGATGCTGATATAGACCAGGCAGTGGAGCTTGCAATCATGGGCATCATGTATAACAAGGGAGAAGTTTGTGTTGGTAGTTCTCGCGTGTATGTCCAGGAAGGGATCTATGATGGATTTGAAAAGAAATTGGTGGAGAAGGCAAAAGCTTGGGTCGTTGGGGATCCTTTTGATCCCAAATCGCAGCAAGGGCCTCAAGCTAGCAAGGACCAATTCAAGAAAATACTTTCCTATATTGAGCACGGAAAGAAAGAGGGTGCAAAACTTTTGACCGGAGGTAACAGAGTTGGCGACAAAGGTTGCTACATTGAACCCACAGTTTTCTCCAATGTAAAGGAGGACATGGTTATAGCACAAGAGGAAATATTCGGCCCTGTATTGGCATTGATGAAATTTAAGACAATAGAGGAAGCAATTAAAAGTGCGAACAATACGAAGTACGGTTTAGCAGCAGGCATTATGACAAACAATTTGGATACATCAAACACAATGTCAAGATCTATTCGTGCAGGCATTATTTGGATAAACTGCTATTTCGTTGCGGGGAGTGAAGTTCCTTTTGGAGGGTACAAGATGAGTGGATTTGGAAGAGATTTGGGCATGGAGGCCCTTCACAAATACTTGCAAATTAAATCTGTTGTTACACCTATTCACAATTCTCCTTGGCTTTGA 1398 0.4313 MSALSVSSDTHNNSFLKMPTIKFTKLFINGNFIDSISEQERAKIMMKWADLIEENIEEVAALDTMDAGKLYYSNKFGEIPAAANLLRYYAGAADKIHGEVLKVNGNFHAYTLMEPIGVVGHIIPWNAPSHSFFIKVSPSLAAGCTMVLKPAEQTPLSALFYAHLAKLVRLSLLKAGIPDGVLNVVPGFGPTAGAAISSHMEIDAVSFTGSVEVGREVMQAAARSNLKPVSLELGGKSPLIIFDDADIDQAVELAIMGIMYNKGEVCVGSSRVYVQEGIYDGFEKKLVEKAKAWVVGDPFDPKSQQGPQASKDQFKKILSYIEHGKKEGAKLLTGGNRVGDKGCYIEPTVFSNVKEDMVIAQEEIFGPVLALMKFKTIEEAIKSANNTKYGLAAGIMTNNLDTSNTMSRSIRAGIIWINCYFVAGSEVPFGGYKMSGFGRDLGMEALHKYLQIKSVVTPIHNSPWL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04059 465 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 36 455 - -
Vian1g04059 465 FunFam Aldehyde dehydrogenase3 235 424 - -
Vian1g04059 465 FunFam NAD/NADP-dependent betaine aldehyde dehydrogenase 31 257 - -
Vian1g04059 465 Pfam Aldehyde dehydrogenase family 36 455 IPR015590 GO:0016491
Vian1g04059 465 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 231 238 IPR029510 GO:0016491
Vian1g04059 465 SUPERFAMILY ALDH-like 15 460 IPR016161 GO:0016491
Vian1g04059 465 FunFam Aldehyde dehydrogenase, putative 427 453 - -
Vian1g04059 465 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 36 455 IPR016162 GO:0016491
Vian1g04059 465 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 237 426 IPR016163 GO:0016620
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04059 Vian-Chr1 63629892 63632189 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04059 16 465 Aldehyde Dehydrogenase Gene Family AT3G24503 61.368 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04059 K12355 - gmx:100527654 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04059 1 63629892 63632189 Vian8g01528 8 34799783 34804358 PCT