Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04040 ATGGGAGAAGGGGAAGGTGAGGGGAGTGATTGTGCTCCCAAGAATGTTGTGCCCAACGACGTCGTCGCGAATGCGCTTTTGCCGTCTGATGTTCCCGCCAAGAAGCTCGCCAGACAGCTCGATTTCACCGGCTTCGGTGGGATGCCACCGCAGTCGCCGGTGGTTTTGCCTCTGCCGCCTTCTGCTTCCGTCAGGGTTGGGAAACCAGAATCTCCAAAGTCGAGACCGAGGCCTGGCTTTGAAATTAAAGAAGCTACTCCCAAAAAACAAAAACAGTGCAATTGTAAACATTCAAAATGCTTGAAGCTATATTGTGAATGTTTTGCTTCGGGAATATATTGTGATGGTTGCAACTGTGTAAATTGCTATAACAATGTGGAAAATGAAGCTGCTAGACGAGAAGCGGTGGAAGCTACTTTGGAACGCAATCCAAATGCGTTCAGGCCGAAAATTGCAAGCAGCCCTCATGGAACACGTGATAGCAGGGAGGATGCTGGGGAAATTTTGATATTGGGAAAGCACAACAAGGGATGCCATTGTAAAAAATCTGGGTGCCTCAAGAAGTACTGTGAGTGCTTCCAAGCCAACATTCTTTGTTCTGAAAATTGTAAATGCATGGATTGCAAAAACTTTGAGGGTAGTGAAGAGAGACAGGCTTTGTTCCATGGAGATCAAAATAACAACATGGTGTATATTCAGCAGGCAGCCAATGCTGCCATAACTGGAGCTATTGGTTCCTCTGGCTATTCATCACCACCAATATCAAAAAAAAGAAAAGGCCAAGAACTCTTATTTGGGTCAACCATCAAAGATCCGTCACTTGGAAGGCTGGGACAACAGGCAAACAATGTCAGAGTTCCTGCACCATCCTCATCCATGTCACCTATTCCAGGTGCTCGTGTTGGACCAGCAACATTAGGTCCTTCAAAATTAATGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACCTGAAGGAACTTTGCTCAGTTCTGGTGCTAGTATCTGGACAAGCTGCTAAGACATTTACTGACCAGAAAAATTTAATGGACAAGCATGCGGAAGATCACACAGAAACTTCTCTTGCTTCTTCAACTCATGAGCAATTACCAAACCAAAAGGAAGCTAATGTTGAGAAAGCTATGGCTGATGATGATTGTTTGAGTGCAAACCAGACAGATAAAATCAGCCCAGATAATTCTTGTTCAGATGGTGCTGATGTCCCAAAAGGGAGGCCAATGTCTCCTGGAACCTTAGCATTGATGTGCGATGAGCAAGATACAATGTTCATGACTTCTGCCTCCCCTATTGGATCAAGGGCTCATGCTTGCAACACATCTTCGCAACCGCCATATGGTCAAGGAATGACAGAGGTCTATGCCGAGCAAGAAAAAATTGTACTGACAAAATTTAGAGACTTTCTCAATAGGGTTATCACTATGGGAGAAATAAATGAAACGAAGTGTTCTTCATTAGCTAGAAGTGAATTAGAGAGTGAAAAGGACCCAAACAACAATTGCACTGGAAATACCAGTACTGAGACAGCCCATCAGCAGGGAACCACTAATAATGTTGTTGCCAAAGCTGCGGGCAACATTACTTCAACATCTTCGTTTCCTGGTGGTAGTCTTATTCCTGAAAAATAG 1650 0.443 MGEGEGEGSDCAPKNVVPNDVVANALLPSDVPAKKLARQLDFTGFGGMPPQSPVVLPLPPSASVRVGKPESPKSRPRPGFEIKEATPKKQKQCNCKHSKCLKLYCECFASGIYCDGCNCVNCYNNVENEAARREAVEATLERNPNAFRPKIASSPHGTRDSREDAGEILILGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDQNNNMVYIQQAANAAITGAIGSSGYSSPPISKKRKGQELLFGSTIKDPSLGRLGQQANNVRVPAPSSSMSPIPGARVGPATLGPSKLMYRSLLADIIQPQHLKELCSVLVLVSGQAAKTFTDQKNLMDKHAEDHTETSLASSTHEQLPNQKEANVEKAMADDDCLSANQTDKISPDNSCSDGADVPKGRPMSPGTLALMCDEQDTMFMTSASPIGSRAHACNTSSQPPYGQGMTEVYAEQEKIVLTKFRDFLNRVITMGEINETKCSSLARSELESEKDPNNNCTGNTSTETAHQQGTTNNVVAKAAGNITSTSSFPGGSLIPEK 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04040 549 MobiDBLite consensus disorder prediction 503 525 - -
Vian1g04040 549 ProSiteProfiles CRC domain profile. 89 213 IPR005172 -
Vian1g04040 549 Coils Coil 123 143 - -
Vian1g04040 549 MobiDBLite consensus disorder prediction 49 81 - -
Vian1g04040 549 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 90 125 IPR005172 -
Vian1g04040 549 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 176 210 IPR005172 -
Vian1g04040 549 SMART CXC_2 173 214 IPR033467 -
Vian1g04040 549 SMART CXC_2 88 128 IPR033467 -
Vian1g04040 549 PANTHER TESMIN/TSO1-RELATED 51 485 IPR028307 -
Vian1g04040 549 MobiDBLite consensus disorder prediction 353 414 - -
Vian1g04040 549 MobiDBLite consensus disorder prediction 496 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04040 Vian-Chr1 63456749 63462751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04040 9 499 CPP Transcription Factor Family AT4G29000 59.476 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vian1g04040 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04040 - - gmx:100786353 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04040 1 63456749 63462751 Vian1g04040 1 63456749 63462751 ECH