Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04039 ATGGAGATGGATCCCCCACCCAAGAGCTGGAGCATCCATACCCGATCCGAGATCATCGCCAAGTACGAGGTCATGGAGCGGGTCGGGTCGGGGGCTTACGCCGACGTCTACCGTGGCCGTCGCCTCTCCGATGGCCTCACCGTCGCCCTCAAGGAAATCCACGACTACCAATCTGCTTTCCGAGAAATCGACGCGTTGCAACTCCTCCAGGGATTCCCAAACGTCGTCGTTATGCACGAATACTTCTGGCGCGACGACGAGGACGCCGTCCTCGTCCTCGAGTTCCTCAGGACCGACTTGGCAACCGTCATCGCTGACGCCGCCAAGGACAACCAGCCCCTCCCCGCCGGCCAGCTCAAGCGGTGGATGATCCAGATTCTCTCTGGTGTCGACGCCTGTCATCGCAACATGGTCCTCCACCGTGATTTGAAGCCCTCGAATCTCTTAATTTCCGAAAATGGCCTCCTCAAGATCGCCGATTTCGGACAGGCAAGAATTCTTACGGAGCCTGGATTTGATGATTCTAATAAGCATGAAGAGTATTCTAGAGACATTGATGATGAGGATACTAGTACTAATACTCACGATGGAAATGCAACATGCACCACAAGTGACATAAACAGGGAAGATGAAGAGAACGAACTTGGTTGTTTCACTTCATGTGTTGGGACTCGTTGGTTTAGGGCTCCTGAGTTGCTTTATGGATCCAGAGACTATGGTTTGGAGGTTGATTTGTGGTCCTTGGGATGTATATTTGCGGAGCTTTTAACTTTGCAGCCTTTGTTTCCTGGAACTGCTGATATTGACCAGCTCAGTAGAATCATTAGTGTTTTGGGTAACCTTGATGAGAGTGTTTGGGTTGGTTGTTCTAAACTTCCTGATTATGGGATAATCTCCTTTAGCAAGGTGGAGAACCCTGCTGGTATTGAAGCCTGTTTACCAAATAGGTCCCCTGATGAAGTGGCTCTGGTGAAAAGACTGGTTTGTTATGATCCTGCTAAGAGGGCTACGGCAATGGAGTTGCTTAATGACAAGTACTTTAATGAAGAGCCTCTTCCTGTGCCGATTTCTGAGCTGCCAGTTCCTCTTAACAGAAACGGACAAGATGAGGATTCCCCTGGTGGGTGGGGTGATCTGGATGGAATGGAATCTGATTCTGATTTTGATGAGTTTGGCCCGCTCAATATTACTAGAACTGGTACCGGTTTCTCCATACAGTTTCCTTGA 1227 0.4963 MEMDPPPKSWSIHTRSEIIAKYEVMERVGSGAYADVYRGRRLSDGLTVALKEIHDYQSAFREIDALQLLQGFPNVVVMHEYFWRDDEDAVLVLEFLRTDLATVIADAAKDNQPLPAGQLKRWMIQILSGVDACHRNMVLHRDLKPSNLLISENGLLKIADFGQARILTEPGFDDSNKHEEYSRDIDDEDTSTNTHDGNATCTTSDINREDEENELGCFTSCVGTRWFRAPELLYGSRDYGLEVDLWSLGCIFAELLTLQPLFPGTADIDQLSRIISVLGNLDESVWVGCSKLPDYGIISFSKVENPAGIEACLPNRSPDEVALVKRLVCYDPAKRATAMELLNDKYFNEEPLPVPISELPVPLNRNGQDEDSPGGWGDLDGMESDSDFDEFGPLNITRTGTGFSIQFP 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04039 408 Pfam Protein kinase domain 22 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g04039 408 ProSiteProfiles Protein kinase domain profile. 22 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g04039 408 Gene3D Transferase(Phosphotransferase) domain 1 109 350 - -
Vian1g04039 408 MobiDBLite consensus disorder prediction 171 193 - -
Vian1g04039 408 SUPERFAMILY Protein kinase-like (PK-like) 15 353 IPR011009 -
Vian1g04039 408 SMART serkin_6 22 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vian1g04039 408 MobiDBLite consensus disorder prediction 171 204 - -
Vian1g04039 408 PANTHER CELL DIVISION PROTEIN KINASE 21 353 - -
Vian1g04039 408 MobiDBLite consensus disorder prediction 362 394 - -
Vian1g04039 408 Gene3D Phosphorylase Kinase; domain 1 13 108 - -
Vian1g04039 408 ProSitePatterns Protein kinases ATP-binding region signature. 28 51 IPR017441 GO:0005524
Vian1g04039 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Vian1g04039 408 FunFam Cyclin-dependent kinase F-1 13 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04039 Vian-Chr1 63451188 63453023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04039 6 408 Core Cell Cycle Gene Families AT4G28980 57.474 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Vian1g04039 Pkinase 7.2e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04039 - - vum:124837370 830.861