Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04036 ATGACCACCGTAACGGTCACCACTCGATCTCAGATCCTCCGCCACACCGCCGCATTCACCTCGTCCGTCCTCTCGCAATCCGAACTACGGCGCCGCCTCATCACCACTCTTCTCCGCGACACTCCGATCTCCGACCAAAAGCACCTCAAACTCGCTGCAGACACTCTAGAAAGCGCGATAGCCTTCTCCAGCCTCGCCCTGCGCGCCTCCTCACTGTCTCTCGTGGAGAAGCTCCTCCTCCCTCTCCCCGACTTCGCCCTCTCCTCGCTACTCCTCTCGCTCGCCCACGCCCTCCGTAACCGTCCAACCGAATCCGCCACCAGCCTCCTCCGAATCTTTCACTCCAACAACAGCAGCAACAAAAACGCTTCACTCGCTAGATCGGAAATCGCTCCTGCACTCTACGAGCGCCTCTTCTCTCTACACCTCTTCCCTGTCTTCCGCTGGTTCGATGAGCAGAGGACGAAGATTCTCTCCTCCACTCCCTCAACCTCCATACATGAAAATGATTATTCGGTTTCTGAGGAGTACTCGGTGGTGCTGCCTTGCGCTAAGGTGCTATCGAAGATGAGCGAGGAGCAGGCCGCAAAGCTCCGGGAGGTGGAGAAAGAGTACGAAGAGGTTCTCGATGACAACTGTAGGGTTCTCGCAGAATATTTCAAAGAGGTTTTGGTGAACGAGAACAGTGACGCGGGGATTAGTCCACCGTCGTTGATAATGAAGAGCGGTGCAAAAGGTGGCGGCAGGGAGAACATAAGGGAGGAGATAACGCGAACGAATCTGTTGGAGATCGGACGGTATAATCCAATATGGTCCGAAAGGGAAGCATCTGTTGAACTATTGAGCCCCAGTTCCAGCAGAAGATCTTCCCAGGAACCATTTTATCCTCAAAGAGTCTTTTCGAGAATTCTCAAACCCAAAAATCCTTCAAAATCTTGGACAACGACAGTCTATTTAAACTCAACCGCTGACGCCGATTTTTCTTCAGACGAGAGTTTGGTTAGTTCTTCTTCAGATTCTGAGGCAGAAAATGAGGAAAAGGACAAAATCGCATTGTTGGAGCCTCGACAAAGCCAAATTCAAGAACAAATGCAAACCATCTTCAAACAATCTAGTGGTTCACCAGATTATCCTATGGCCGACTTCGATAACCCGCTGCATGAAATTGGGAAACATGCACCCCCCAAGGACTTTGTCTGTCCAATAACAAGTCACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAAACTTATGAACGTAAAGCTATCGAGGAATGGTTCAACAGAGGGAACTTAACCTGTCCCATCACTCGCCAGAAGCTGCAAAACACTCAGCTTCCCAAAACAAATTATGTGCTCAAACGACTAATTGCAAGCTGGAAAGATCGCAACCCTCATTTGGTCCAACCGCCGTATGAGAGTCCATACGAAGATACTGAGGCAGTTGTGCAGTCAACAACGGCTTCAACTTCTCCTAATAGCGTTATAACCCAAGCCACAGTTGACGGGATGATGAGTGAGTTACGCTGTGCCATCAATAATCTGTACATGTCAGAGGTTCTCAAGGAATCGGAAATGGCGGTACTTCAAGTTGAAAAGTTCTGGAGAGGAGTGAATATTGGAGTGGATATCCACAGAATGTTAGTAAAACCTGCGGTAATCAATGGATTTATGGAGATTCTTTTCAATTCTGTGGAGCCCCAGGTGCTACAAGCAGCAGTTTTCCTTCTAGCCGAGATGGGGTCAAGGGACAACGCTGTAATCGAGACTCTCACCCGTGTGAAGACTGATGTAGAATGTATCATGGCTCTTTTCAAGAACGGATTGACAGAGGCTGTTGTGTTGTTGCATCTGCTAAACCCTCCCATCACTAGTCTTGCGGAGATGGCCATAGTGGAGTCTCTCATAACGGTTTTGAATACGAAAGAGGAAGAATCGGTTACGATGTGTTTGAAGCCAAAAACAGCTGCAGTGCTTTTACTTGCCAGGATAACTCGAAGCAGTGAAGAGATAATTGCATCATCGGTTGTCAATACCCTTTTCTCTGAAAATGCAATTGGAACTATTGCCAGCAGTTTTGGAGCTGACTTGGCAAAGGAGAGGATTGCTGCAGTAGAGATCTTATTGAGGTGCATGGAAGAAGATGGGACTTGCAGAAAGAATATTGCTGATAAAGCAGAGTTGTCACCACTTATGGAAACCTTAATCGGTGCAGATGATGGAGAGCGTTTTAAGATTATTCAGTTTTTTGCTGAGTTGGTCAAATTAAACAGGAGGACATTCACTGAACAAATTCTCCATATTATAAAGGAAGAAGGACCATTTAGCACAATGCATACTCTTCTTATTTATTTGCAGGCAGCTCCTCACGATCATTGTCCAGTTATGGCTGGCCTCTTACTCCAACTTGATCTTCTGGATGAGCCAAGAAAAATGAGCGTATACCGTGAAGAGGCTATGGATACTCTTATTGCATGCCTGAGAAACACAGATTTCCCCGTTACCCAATTAGCAGCTGCAGATACAATCATGTCACTGCAAGGGAGCTTCGACTTCTTCGGAAACCCTCTATGCAGAGAAGTCCTCCTTAAACGTGCAGGTATTGACAAAAGTTCCAGAAATCTTGTACTGGTGGGCCATCAGATTAGCAACTCCAGTCCAGAAATTGATATAACTCCAGAAGACGAGAAGGCAGCTGATGATTCGGAAAGAAGAATTGCATATGTTCTAGTTAGCCATGAATTTGGCACTATTTTTGAGGCTTTAGCTGATGGCATGAAGGGCCGAAATCCAGAACTACGATCAGCATGCTTTATATCAGCTACCTGGCTCACGTACATGTTGAGCATTCTACCAGATACAGGTATACAAGTACCAGCTCGTGCTTGTTTGCTGAAGCAGTTCATAGCTAAATTTAATTCGGCTCGGGATGTAGAAGACAGAATCCTTTCTATGGTTGCTCTCAATAGCTTTCTTCAGTTCCCTGAAGGCTTAGGTGATCTAACTTCCTACACTAAGGATATCTTAAGAGGATTGAGAGAGCTGAAGAGATCCTGTCCCTTGGCATCTAAAATGCTAAAATCTCTGGTTGAAGAAAATGAATCTAAAGCGGACATTTGGATACATAAAGAGCTCATAAAAGAAGACTGCAGCGAAAATGGAGAGGTGGTGTCTGTCACGTGCTTTAAGGATAAAATATTTTCTGGTCATACAGATGGGACGATTAAGGTCTGGACATTAAAGAATAATTTATTCCATCTGTTGCAAGAAATCCAAGAACATACTAAAGCAGTGACAAACTTGGTGATTTCAGAGTCTGGTGACAGGCTATACAGTGGTTCACTTGACCGAACTTCAAAGGTCTGGTCCATTGGAAAGGCAGCAATACATTGTGTACAGGTGTATGATATGAAGGACCAGATTCATAATTTAGTTGTAACCAATAGCTTAGCTTGTTTCGTTCCGCAGGGCGCCGGTGTCAAGGTTCAGACACTGAATGGAGAGTCAAAAGTGTTAAATTCTAGCAAATATGTGAAGTGTTTGACTCATGTTGATGGGAAGTTATATTGTGGATGCCATGACAGCAGTGTTCAGGAGATACATTTGGCCACTGGAACAGTCAACACTATTCAAAGTGGTTATAAAAGATTACTTGCGAAAGCAAACCCTATTCATGCAATACAAATTCATGGTGAATTTATATATGCAGCTGGTTCTTCCATGGATGGATCTTCTATAAAGATATGGAACAGTTCCAGTTACAGTATGGTTGGATCACTGCAAACTGGATCTGAAGTGCGGACTATGGCAGTGAGCTCAGGATTGATTTATCTGGGGTGCAAAGGAGGTACTGTGGAAATTTGGGATAAGAAGAAAAGCAGTAAAGTTGACACGTTGCAAATGGGTACCAATTGTAGGGTCAATTGCATGGCTCTAGACAGGAATGAAGAAGTTTTGGTAACTGGAACTTCAGATGGACAAATTCAGGCATTTGTACATTGCTTGGGAAATGAATTAACAGAAGATTTTGAGAGTACAGCTGGTGCGGGAAGACATAGATGA 4065 0.4492 MTTVTVTTRSQILRHTAAFTSSVLSQSELRRRLITTLLRDTPISDQKHLKLAADTLESAIAFSSLALRASSLSLVEKLLLPLPDFALSSLLLSLAHALRNRPTESATSLLRIFHSNNSSNKNASLARSEIAPALYERLFSLHLFPVFRWFDEQRTKILSSTPSTSIHENDYSVSEEYSVVLPCAKVLSKMSEEQAAKLREVEKEYEEVLDDNCRVLAEYFKEVLVNENSDAGISPPSLIMKSGAKGGGRENIREEITRTNLLEIGRYNPIWSEREASVELLSPSSSRRSSQEPFYPQRVFSRILKPKNPSKSWTTTVYLNSTADADFSSDESLVSSSSDSEAENEEKDKIALLEPRQSQIQEQMQTIFKQSSGSPDYPMADFDNPLHEIGKHAPPKDFVCPITSHIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKDRNPHLVQPPYESPYEDTEAVVQSTTASTSPNSVITQATVDGMMSELRCAINNLYMSEVLKESEMAVLQVEKFWRGVNIGVDIHRMLVKPAVINGFMEILFNSVEPQVLQAAVFLLAEMGSRDNAVIETLTRVKTDVECIMALFKNGLTEAVVLLHLLNPPITSLAEMAIVESLITVLNTKEEESVTMCLKPKTAAVLLLARITRSSEEIIASSVVNTLFSENAIGTIASSFGADLAKERIAAVEILLRCMEEDGTCRKNIADKAELSPLMETLIGADDGERFKIIQFFAELVKLNRRTFTEQILHIIKEEGPFSTMHTLLIYLQAAPHDHCPVMAGLLLQLDLLDEPRKMSVYREEAMDTLIACLRNTDFPVTQLAAADTIMSLQGSFDFFGNPLCREVLLKRAGIDKSSRNLVLVGHQISNSSPEIDITPEDEKAADDSERRIAYVLVSHEFGTIFEALADGMKGRNPELRSACFISATWLTYMLSILPDTGIQVPARACLLKQFIAKFNSARDVEDRILSMVALNSFLQFPEGLGDLTSYTKDILRGLRELKRSCPLASKMLKSLVEENESKADIWIHKELIKEDCSENGEVVSVTCFKDKIFSGHTDGTIKVWTLKNNLFHLLQEIQEHTKAVTNLVISESGDRLYSGSLDRTSKVWSIGKAAIHCVQVYDMKDQIHNLVVTNSLACFVPQGAGVKVQTLNGESKVLNSSKYVKCLTHVDGKLYCGCHDSSVQEIHLATGTVNTIQSGYKRLLAKANPIHAIQIHGEFIYAAGSSMDGSSIKIWNSSSYSMVGSLQTGSEVRTMAVSSGLIYLGCKGGTVEIWDKKKSSKVDTLQMGTNCRVNCMALDRNEEVLVTGTSDGQIQAFVHCLGNELTEDFESTAGAGRHR 1354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04036 1354 Coils Coil 696 716 - -
Vian1g04036 1354 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1332 - -
Vian1g04036 1354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 470 IPR013083 -
Vian1g04036 1354 SUPERFAMILY ARM repeat 555 974 IPR016024 -
Vian1g04036 1354 MobiDBLite consensus disorder prediction 328 347 - -
Vian1g04036 1354 CDD RING-Ubox_PUB 395 447 IPR045210 -
Vian1g04036 1354 Pfam U-box domain 395 465 IPR003613 GO:0004842|GO:0016567
Vian1g04036 1354 Gene3D - 539 871 IPR011989 -
Vian1g04036 1354 ProSiteProfiles U-box domain profile. 393 468 IPR003613 GO:0004842|GO:0016567
Vian1g04036 1354 Gene3D - 1158 1334 IPR015943 GO:0005515
Vian1g04036 1354 SMART WD40_4 1293 1333 IPR001680 GO:0005515
Vian1g04036 1354 SMART WD40_4 1043 1080 IPR001680 GO:0005515
Vian1g04036 1354 SMART WD40_4 1212 1251 IPR001680 GO:0005515
Vian1g04036 1354 SMART WD40_4 1254 1290 IPR001680 GO:0005515
Vian1g04036 1354 SMART WD40_4 1085 1124 IPR001680 GO:0005515
Vian1g04036 1354 Gene3D - 1042 1156 IPR015943 GO:0005515
Vian1g04036 1354 ProSiteProfiles Trp-Asp (WD) repeats profile. 1092 1125 IPR001680 GO:0005515
Vian1g04036 1354 Coils Coil 184 211 - -
Vian1g04036 1354 Pfam WD domain, G-beta repeat 1089 1124 IPR001680 GO:0005515
Vian1g04036 1354 SMART Ubox_2 397 461 IPR003613 GO:0004842|GO:0016567
Vian1g04036 1354 SUPERFAMILY RING/U-box 392 469 - -
Vian1g04036 1354 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1092 1125 - -
Vian1g04036 1354 SUPERFAMILY WD40 repeat-like 1063 1331 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04036 Vian-Chr1 63431038 63438475 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04036 395 472 U-box Gene Family AT1G71020 47.436 3.88e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04036 - - vun:114176884 2348.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04036 1 63431038 63438475 Vian1g04036 1 63431038 63438475 ECH