Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04034 ATGAACAGAGGTGTCTTGCAAAGCTCACCGGTGCAACAAATGATGGCTGCAAACCCTAACAATTGGTGGAACATCAACACCATGCGCCCTCCTCCGCCTTCTCCTCCTCCTCCTTCTCAGCCTTCTTCTCCGTTCTTCTCCACTCCTTCCAACTTTCTAACTCCGTATAATACCTCTTCTTCTCTTCCTCTTCCTTCTTGGCATGATAACAATCAAGAACTACCTGAGTCATGGAGCCAGCTTCTCATGAGTGGGATGGTGTCTGAAGAAGAGAAAGGGGCTATGTGCCAGGTTCAGCAACAAATGCTGAGTCAGGCTTCAAGGGTTCCTATTGTTGATGTTAAGCAAGAAGGCTCGGTGAACAGCTACGTGTACGGTCATGGAAACGAAGAGTTTCACCCAGCAAAGCCAACTTGGCCTCAAATAATGCCTTCTTCTTCCCCCAAATCATGTGTAACAAGTTTCAGCAGCAGCATGTTAGATTTCTCTAACAGTAACACAGATGCTAGGCCTCCTCCTCCAGACCCATCATCAGAGTGTAATAGCACTGCAGCTGGTGGGGCATTCAAGAAAGCTAGGGTTCAACCGCCCACAACGCAGACGACCTTCAAGGTTAGGAAGGAGAAATTAGGTGACAGAATTACAGCCCTTCATCAACTCGTTTCCCCGTTTGGAAAGACTGACACGGCGTCTGTCTTATTAGAAGCTATTGGGTATATCAGATTCCTTCAGAATCAAATTGAGGCCCTTAGCTTACCATACTTGGGTAATGGATCAGGAAACATGAGGCAGCAACAATCTGTTCAAGGAGAGAAGAATTGTATATTCCCTGAAGACCCCGGTCAGTTGCTGAACGAAAACTGCTTGAAGAGGAAAGCAACCAGTGAGAAGGATTCTGAAGAAGAGGCGAAGAAGGATCTAAGGAGTAGAGGGTTGTGTCTGGTTCCAGTGTCATGCACGCTGCAAGTTGGAAGTGACAATGGAGCTGATTATTGGGCACCAGCTTTTGGAGGGGGGTTTCGGTAG 1026 0.4737 MNRGVLQSSPVQQMMAANPNNWWNINTMRPPPPSPPPPSQPSSPFFSTPSNFLTPYNTSSSLPLPSWHDNNQELPESWSQLLMSGMVSEEEKGAMCQVQQQMLSQASRVPIVDVKQEGSVNSYVYGHGNEEFHPAKPTWPQIMPSSSPKSCVTSFSSSMLDFSNSNTDARPPPPDPSSECNSTAAGGAFKKARVQPPTTQTTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQNQIEALSLPYLGNGSGNMRQQQSVQGEKNCIFPEDPGQLLNENCLKRKATSEKDSEEEAKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGGFR 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04034 341 Coils Coil 290 310 - -
Vian1g04034 341 MobiDBLite consensus disorder prediction 26 44 - -
Vian1g04034 341 MobiDBLite consensus disorder prediction 162 199 - -
Vian1g04034 341 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 243 IPR011598 GO:0046983
Vian1g04034 341 Gene3D - 201 255 IPR036638 GO:0046983
Vian1g04034 341 MobiDBLite consensus disorder prediction 21 50 - -
Vian1g04034 341 FunFam transcription factor bHLH68 isoform X1 201 254 - -
Vian1g04034 341 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 204 254 IPR036638 GO:0046983
Vian1g04034 341 CDD bHLH_AtbHLH_like 202 251 IPR045239 -
Vian1g04034 341 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 65 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04034 Vian-Chr1 63421356 63424184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04034 1 283 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 44.382 1.21e-67 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian1g04034 - - gmx:100785156 569.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04034 1 63421356 63424184 Vian1g04034 1 63421356 63424184 ECH
Vian1g04034 1 63421356 63424184 Vian8g01567 8 35183348 35186714 PCT