Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian1g04032 ATGTCTGAGCCATTGGAAGAGGTTCCTTCAATGAAAGGAGGGTGCGAAGAAGGGTTGAACCTGAGGGCCACTGAGCTAAGGCTTGGGTTGCCAGGGCGTGAGTCACCTGAGAGGGAGGGCGCGTTTAAGGCTGTGGTGGTGTCTGGGTCCAAAAGGGGTTTCTCTGATGCCATTGATGGAGGTTCTGGAAACTGGAATGGTGGATCTGAAGTGGGTTTGGGAAAAGATGTTGTCTTGTTCTCTCCGAGGGGAACTGTTAGTGCTGCCAAGTCTCTCACCCTCACTGCAACAGACTGCACCAAACAGCCTACTGTTTTGGGTGCTTCTGTTCTCAAAGAAACTGTTCCACACTCTCCAAAACCGCTGCATGAGAAGAAACCTCAGATTTCTGCTCCAGCTGCGAAGGCGCAAGTTGTGGGGTGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCTCAGCCTCAGAAGAATGAAGATGCTGAGGCAGAAGCCAAGTCTGAATGTCTTTATGTTAAAGTCAGCATGGAAGGTGCTCCATACTTGAGGAAAGTGGATCTTAATAGTTTTGGCACTTACAAGGAACTCTCTTTGGCACTCGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGGCTCTTATGGGATTTCTTCTAGTCGAGAAAAATTAAGTGAAAGTAGATTGATGGATCTTCTTCATGGTTCAGAATATGTTCTTACATATGAAGACAAGGATGGAGATTGGATGCTAGTTGGTGATGTTCCCTGGGAGATGTTCACTGAATCTTGCAAGAGGCTGAGGATAATGAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGGGCGGTGGAAAAGTGCAAAAGTCGCAACTAA 873 0.4674 MSEPLEEVPSMKGGCEEGLNLRATELRLGLPGRESPEREGAFKAVVVSGSKRGFSDAIDGGSGNWNGGSEVGLGKDVVLFSPRGTVSAAKSLTLTATDCTKQPTVLGASVLKETVPHSPKPLHEKKPQISAPAAKAQVVGWPPIRSFRKNSMAQPQKNEDAEAEAKSECLYVKVSMEGAPYLRKVDLNSFGTYKELSLALEKMFSCFTISQCGSYGISSSREKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTESCKRLRIMKSSEAIGLAPRAVEKCKSRN 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian1g04032 290 SUPERFAMILY CAD & PB1 domains 166 271 - -
Vian1g04032 290 ProSiteProfiles PB1 domain profile. 169 272 IPR000270 GO:0005515
Vian1g04032 290 FunFam Auxin-responsive protein 164 282 - -
Vian1g04032 290 Gene3D - 163 284 - -
Vian1g04032 290 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 19 277 IPR003311 GO:0005634|GO:0006355
Vian1g04032 290 Pfam AUX/IAA family 24 281 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian1g04032 Vian-Chr1 63373218 63375088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian1g04032 172 280 B3 DNA Binding Superfamily AT4G23980 32.110 9.09e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vian1g04032 AUX_IAA 6.9e-84 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian1g04032 1 63373218 63375088 Vian8g01569 8 35226988 35229285 PCT